Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004429`

染色体: Chr08 坐标: 53976474-53979210 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004429`
名称	SmilChr08G004429
描述	(-)-isopiperitenone reductase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53976474 - 53979210 / `-`

ID 对照

NCBI Gene ID	`LOC130999146`
GeneID	`130999146`
locus_tag	`-`
NCBI Name	`LOC130999146`
原始查询	`SmilChr08G004429`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(-)-isopiperitenone reductase-like
产物	(-)-isopiperitenone reductase-like
Arabidopsis	`AT3G61220` (SDR1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825294] identity=48.7; qcov=0.996; evalue=4.41e-84; confidence=high
Rice	`Os04g0531900` - identity=43.5; qcov=0.982; evalue=5.97e-68; confidence=medium
GO	GO:0016020 (membrane)
KEGG	smil00902 (Monoterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130999146

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057780632.1`
2	Cytoplasm	细胞质	0.80000	`XP_057780633.1`
3	Nucleus	细胞核	0.00000	`XP_057780632.1`
4	Chromosome	染色体	0.00000	`XP_057780632.1`
5	Centromere	着丝粒	0.00000	`XP_057780632.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53976565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:53976568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B45,B88,C21
`Chr8:53976569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B30,C45
`Chr8:53976582`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B131
`Chr8:53976582`	`GA`	`G`	1bp_deletion	CDS_variant	1	B131
`Chr8:53976604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,C67
`Chr8:53976605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:53976614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B30,C45
`Chr8:53976662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B6
`Chr8:53976712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:53976748`	`CGA`	`C`	2bp_deletion	frameshift_variant	15	B135,B5,B65,B82,B87,C10,C13,C14,C22,C30,C48,C52,C59,C7,D3
`Chr8:53976759`	`A`	`AGG`	2bp_insertion	frameshift_variant	12	B108,B17,B40,B59,B78,B93,C11,C16,C25,C29,C61,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780632.1

311 aa

156

311

adh_short

Epimerase

adh_short_C2

PF00106 adh_short 13-102 aa PF01370 Epimerase 14-121 aa PF08659 KR 15-101 aa PF13561 adh_short_C2 18-110 aa

XP_057780633.1

276 aa

138

276

adh_short

adh_short_C2

PF00106 adh_short 3-67 aa PF13561 adh_short_C2 3-75 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780632.1`	Pfam	`PF00106`	adh_short	Domain	13	102	3.1e-33	115.6	short chain dehydrogenase
`XP_057780632.1`	Pfam	`PF01370`	Epimerase	Family	14	121	1.1e-05	25.8	NAD dependent epimerase/dehydratase family
`XP_057780632.1`	Pfam	`PF08659`	KR	Family	15	101	6.6e-09	36.6	KR domain
`XP_057780632.1`	Pfam	`PF13561`	adh_short_C2	Domain	18	110	4.8e-26	92.5	Enoyl-(Acyl carrier protein) reductase
`XP_057780633.1`	Pfam	`PF00106`	adh_short	Domain	3	67	9.4e-22	78.2	short chain dehydrogenase
`XP_057780633.1`	Pfam	`PF13561`	adh_short_C2	Domain	3	75	1.8e-19	71.0	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924650.1
AAAAAACATAAAACAAAAAGAGAGTAGAGAAAAGGAAGCGATGGCAGAGGCACTTGTCCAGCCCGCAAAACAGAGGAGCAAACAAAGGAATTGGATTCCAAATTTGCAAGCAGTTAGCATCCAAAGGAATGGTTGTGATTTTAGCATCAAGAGATGAAAAGAGAGGCATTGAAGCTCAACAAAAGCTTAAACAATCCCATAATAATGTTGTTTTTCATCAACTGGATGTCGTTGATCCTGCTAGCGTTGCCGCTATTTTT...

XM_057924649.1
CATAAAACAAAAAGAGAGTAGAGAAAAGGAAGCGATGGCAGAGGCACTTGTCCAGCCCGCAAAACAGAGGTATGCTTTGGTGACAGGAGCAAACAAAGGAATTGGATTCCAAATTTGCAAGCAGTTAGCATCCAAAGGAATGGTTGTGATTTTAGCATCAAGAGATGAAAAGAGAGGCATTGAAGCTCAACAAAAGCTTAAACAATCCCATAATAATGTTGTTTTTCATCAACTGGATGTCGTTGATCCTGCTAGCGTTG...

CDS

2 records

下载 CDS FASTA

LOC130999146
ATGGCAGAGGCACTTGTCCAGCCCGCAAAACAGAGGTATGCTTTGGTGACAGGAGCAAACAAAGGAATTGGATTCCAAATTTGCAAGCAGTTAGCATCCAAAGGAATGGTTGTGATTTTAGCATCAAGAGATGAAAAGAGAGGCATTGAAGCTCAACAAAAGCTTAAACAATCCCATAATAATGTTGTTTTTCATCAACTGGATGTCGTTGATCCTGCTAGCGTTGCCGCTATTTTTGAGTTCATCAAATCGAGATTCGG...

LOC130999146
ATGGTTGTGATTTTAGCATCAAGAGATGAAAAGAGAGGCATTGAAGCTCAACAAAAGCTTAAACAATCCCATAATAATGTTGTTTTTCATCAACTGGATGTCGTTGATCCTGCTAGCGTTGCCGCTATTTTTGAGTTCATCAAATCGAGATTCGGAAGGCTTGACATTCTGGTGAATAATGCAGGAATTCTTGGAGCAGATGTGGAAGGAGATGTTTCTGCGCTTGAAGAGTACATCAATGACGATGTCAAGATAGTGTT...

Protein

2 records

下载 Protein FASTA

XP_057780632.1
MAEALVQPAKQRYALVTGANKGIGFQICKQLASKGMVVILASRDEKRGIEAQQKLKQSHNNVVFHQLDVVDPASVAAIFEFIKSRFGRLDILVNNAGILGADVEGDVSALEEYINDDVKIVLANGKPQPFHPKANGKLVETLKGAEECIETNYYGAKRVTEALIPLLQLSHSPTIVNVSSTLGSLVLQTNEWAKEVFNSKDSLTEERVDEVVQQFLNSFKEGKLEENQWPSHFAAYKVSKEALNACTWLAAKKYPRFCIN...

XP_057780633.1
MVVILASRDEKRGIEAQQKLKQSHNNVVFHQLDVVDPASVAAIFEFIKSRFGRLDILVNNAGILGADVEGDVSALEEYINDDVKIVLANGKPQPFHPKANGKLVETLKGAEECIETNYYGAKRVTEALIPLLQLSHSPTIVNVSSTLGSLVLQTNEWAKEVFNSKDSLTEERVDEVVQQFLNSFKEGKLEENQWPSHFAAYKVSKEALNACTWLAAKKYPRFCINSVCPGFTRTTITFNHGLLSEAEAAEAPVKLALLAH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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