当前解析结果
SmilChr08G004438| 统一新 Gene ID | SmilChr08G004438 |
|---|---|
| 名称 | SmilChr08G004438 |
| 描述 | pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 54068900 - 54069847 / + |
| NCBI Gene ID | LOC130998682 |
|---|---|
| GeneID | 130998682 |
| locus_tag | - |
| NCBI Name | LOC130998682 |
| 原始查询 | SmilChr08G004438 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At4g16835%2C mitochondrial-like |
| Arabidopsis | AT4G16835 (AT4G16835)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827390] identity=37.7; qcov=0.892; evalue=8.55e-60; confidence=medium |
| Rice | Os07g0588100- identity=38.1; qcov=0.917; evalue=4.88e-57; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF14432 (DYW_deaminase); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998682 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057780077.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057780077.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780077.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780077.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780077.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:54068993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,D3 |
Chr8:54069044 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B82,C10,C48,C52 |
Chr8:54069044 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B82,C10,C48,C52 |
Chr8:54069083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:54069150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,D11 |
Chr8:54069163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,D3 |
Chr8:54069167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,A7,B81,C35,D5 |
Chr8:54069188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B49,C32,C68 |
Chr8:54069197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C48 |
Chr8:54069199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr8:54069239 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A11,B30,B31,C25,C80,D9 |
Chr8:54069240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780077.1PF01535
PPR 105-129 aa
PF20431
E_motif 171-208 aa
PF01535
PPR 175-198 aa
PF14432
DYW_deaminase 233-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780077.1 |
Pfam | PF01535 |
PPR | Repeat | 105 | 129 | 9.8e-09 | 35.6 | PPR repeat |
XP_057780077.1 |
Pfam | PF20431 |
E_motif | Repeat | 171 | 208 | 2.1e-09 | 38.2 | E motif |
XP_057780077.1 |
Pfam | PF01535 |
PPR | Repeat | 175 | 198 | 9.8e-09 | 35.6 | PPR repeat |
XP_057780077.1 |
Pfam | PF14432 |
DYW_deaminase | Domain | 233 | 315 | 5.4e-24 | 84.5 | DYW family of nucleic acid deaminases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。