Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004441`

染色体: Chr08 坐标: 54119424-54125306 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004441`
名称	SmilChr08G004441
描述	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	54119424 - 54125306 / `-`

ID 对照

NCBI Gene ID	`LOC130999164`
GeneID	`130999164`
locus_tag	`-`
NCBI Name	`LOC130999164`
原始查询	`SmilChr08G004441`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
产物	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Arabidopsis	`AT4G00730` (ANL2) Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828022] identity=72.4; qcov=0.99; evalue=0; confidence=high
Rice	`Os02g0674800` (Roc5(t)) - identity=64.7; qcov=1.02; evalue=0; confidence=high
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C)
InterPro	-
eggNOG	-
NR	GeneID:130999164

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780647.1`
2	Chromosome	染色体	0.00000	`XP_057780647.1`
3	Centromere	着丝粒	0.00000	`XP_057780647.1`
4	Chromatin	染色质	0.00000	`XP_057780647.1`
5	Telomere	端粒	0.00000	`XP_057780647.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:54119846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:54119966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr8:54119986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B100,B62
`Chr8:54119996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr8:54120011`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:54120015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:54120056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:54120068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B8,C51,C57
`Chr8:54120113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:54120158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:54120906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:54121183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B33,C82,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780647.1

800 aa

400

800

Homeodomain

START

PDF2_C

PF00046 Homeodomain 121-176 aa PF01852 START 311-538 aa PF25797 PDF2_C 559-798 aa

XP_057780648.1

768 aa

384

768

Homeodomain

START

PDF2_C

PF00046 Homeodomain 89-144 aa PF01852 START 279-506 aa PF25797 PDF2_C 527-766 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780647.1`	Pfam	`PF00046`	Homeodomain	Domain	121	176	3.3e-19	69.2	Homeodomain
`XP_057780647.1`	Pfam	`PF01852`	START	Domain	311	538	8.3e-53	179.5	START domain
`XP_057780647.1`	Pfam	`PF25797`	PDF2_C	Domain	559	798	2.2e-106	355.1	PDF2-like, C-terminal domain
`XP_057780648.1`	Pfam	`PF00046`	Homeodomain	Domain	89	144	3.1e-19	69.2	Homeodomain
`XP_057780648.1`	Pfam	`PF01852`	START	Domain	279	506	7.4e-53	179.7	START domain
`XP_057780648.1`	Pfam	`PF25797`	PDF2_C	Domain	527	766	2e-106	355.2	PDF2-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924665.1
GACTCCACATAGTGTTGCGGGTATTATCTTCACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCAATTGTTGTTTTCTTCTCACCTCTCTCTCTCTCTTTCTGAGCCCAAAAATACAAAAGCCTTTTTGAGCCCTTTTTCTCTCTCTATCTCTGCTTTTGTTGGACATGAGAAGTAGCTTTTTGCAAGTCAAGCATGCAGATATTGAGATAACTTGGCGGCGGCGGTGCAAGAATTGATATACCTTTCACCAATAG...

XM_057924664.1
GACTCCACATAGTGTTGCGGGTATTATCTTCACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCAATTGTTGTTTTCTTCTCACCTCTCTCTCTCTCTTTCTGAGCCCAAAAATACAAAAGCCTTTTTGAGCCCTTTTTCTCTCTCTATCTCTGCTTTTGTTGGACATGAGAAGTAGCTTTTTGCAAGTCAAGCATGCAGATATTGAGATAACTGTGAGCACCAAGAAAAGCTCCTTGTAATAAAACTAGGTTTTT...

CDS

2 records

下载 CDS FASTA

LOC130999164
ATGAATTTTGGGGATTTTCTTGATAACAATTCTTGTAGTGGCGGCGGCGGTGCAAGAATTGATATACCTTTCACCAATAGCATCACCAACAACACCATGCCCGCCGGCGCAATCTCTCAGCCCCGCTTCCTCTCCCAGTCTCTCTCCTCCAAGCCCATGTTCACCTCTCCCGGCCTCTCTCTAGCCCTCCAAACGAGCATGGAGGGGCAAGGGGAGATGGCGAGGATGGTGGAGAATAATGAGATGAGCAATGTTGGTGG...

LOC130999164
ATGCCCGCCGGCGCAATCTCTCAGCCCCGCTTCCTCTCCCAGTCTCTCTCCTCCAAGCCCATGTTCACCTCTCCCGGCCTCTCTCTAGCCCTCCAAACGAGCATGGAGGGGCAAGGGGAGATGGCGAGGATGGTGGAGAATAATGAGATGAGCAATGTTGGTGGGAGAAGGAGCAGAGACGAAGAGCACGAGAGCAGATCTGGCAGCGGCGACATGGACGGCGCATCCGGCGACGATCAAGACGCCGCCGACAAGCCGCC...

Protein

2 records

下载 Protein FASTA

XP_057780647.1
MNFGDFLDNNSCSGGGGARIDIPFTNSITNNTMPAGAISQPRFLSQSLSSKPMFTSPGLSLALQTSMEGQGEMARMVENNEMSNVGGRRSRDEEHESRSGSGDMDGASGDDQDAADKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSILRQENDKLRAENMSIREAMRNPICTNCGGPAVIGEISLEEQHIRIENARLKDELDRVCALAGKFLGRPIPSMGM...

XP_057780648.1
MPAGAISQPRFLSQSLSSKPMFTSPGLSLALQTSMEGQGEMARMVENNEMSNVGGRRSRDEEHESRSGSGDMDGASGDDQDAADKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSILRQENDKLRAENMSIREAMRNPICTNCGGPAVIGEISLEEQHIRIENARLKDELDRVCALAGKFLGRPIPSMGMPNSSLELGVGGGNGFPALIPSDFSVGMASPLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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