当前解析结果
SmilChr08G004447| 统一新 Gene ID | SmilChr08G004447 |
|---|---|
| 名称 | SmilChr08G004447 |
| 描述 | transcription factor MYB17-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 54205178 - 54206536 / + |
| NCBI Gene ID | LOC130999170 |
|---|---|
| GeneID | 130999170 |
| locus_tag | - |
| NCBI Name | LOC130999170 |
| 原始查询 | SmilChr08G004447 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB17-like |
| 产物 | transcription factor MYB17-like |
| Arabidopsis | AT3G61250 (MYB17)myb domain protein 17 [Source:NCBI gene (formerly Entrezgene);Acc:825297] identity=64.5; qcov=0.943; evalue=1.54e-122; confidence=high |
| Rice | Os02g0641900 (myb7)- identity=48.8; qcov=1.02; evalue=1.17e-87; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999170 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780654.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057780654.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057780654.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057780654.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057780654.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:54205703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:54205791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr8:54205867 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C79 |
Chr8:54205867 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C79 |
Chr8:54205880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:54205894 |
CCG |
C |
2bp_deletion | frameshift_variant | 2 | B4,C10 |
Chr8:54205894 |
CCG |
C |
2bp_deletion | CDS_variant | 2 | B4,C10 |
Chr8:54205997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr8:54206021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,C31,C5,C86 |
Chr8:54206024 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:54206078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,D10 |
Chr8:54206079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780654.1PF00249
Myb_DNA-binding 14-61 aa
PF13921
Myb_DNA-bind_6 17-76 aa
PF00249
Myb_DNA-binding 67-112 aa
PF13921
Myb_DNA-bind_6 70-114 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780654.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 14 | 61 | 8.2e-37 | 125.8 | Myb-like DNA-binding domain |
XP_057780654.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 17 | 76 | 6.2e-20 | 71.9 | Myb-like DNA-binding domain |
XP_057780654.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 67 | 112 | 8.2e-37 | 125.8 | Myb-like DNA-binding domain |
XP_057780654.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 70 | 114 | 6.2e-20 | 71.9 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。