当前解析结果
SmilChr08G004466| 统一新 Gene ID | SmilChr08G004466 |
|---|---|
| 名称 | SmilChr08G004466 |
| 描述 | RING-H2 finger protein ATL51-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 54337738 - 54339684 / + |
| NCBI Gene ID | LOC130999190 |
|---|---|
| GeneID | 130999190 |
| locus_tag | - |
| NCBI Name | LOC130999190 |
| 原始查询 | SmilChr08G004466 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL51-like |
| 产物 | RING-H2 finger protein ATL51-like |
| Arabidopsis | AT2G20030 (AT2G20030)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816522] identity=32.8; qcov=0.665; evalue=3.49e-18; confidence=low |
| Rice | Os02g0676500 (OsRFPH2-2)- identity=47.4; qcov=0.975; evalue=3.01e-50; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999190 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.40000 | XP_057780675.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057780675.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057780675.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057780675.1 |
| 5 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057780675.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:54338037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:54339080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:54339097 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D11 |
Chr8:54339097 |
AT |
A |
1bp_deletion | CDS_variant | 1 | D11 |
Chr8:54339270 |
GCC |
G |
2bp_deletion | frameshift_variant | 8 | B111,B117,B2,B26,B28,B7,B80,D3 |
Chr8:54339368 |
TTG |
T |
2bp_deletion | frameshift_variant | 6 | B122,B136,B137,B34,B90,B92 |
Chr8:54339396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B110,B74 |
Chr8:54339511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr8:54339529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780675.1PF17123
zf-RING_11 89-118 aa
PF13923
zf-C3HC4_2 89-131 aa
PF12678
zf-rbx1 89-132 aa
PF13639
zf-RING_2 89-132 aa
PF14634
zf-RING_5 89-132 aa
PF13445
zf-RING_UBOX 90-129 aa
PF00097
zf-C3HC4 90-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780675.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 89 | 118 | 7.8e-10 | 39.0 | RING-like zinc finger |
XP_057780675.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 89 | 131 | 9.8e-09 | 35.6 | Zinc finger, C3HC4 type (RING finger) |
XP_057780675.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 89 | 132 | 6.8e-11 | 42.9 | RING-H2 zinc finger domain |
XP_057780675.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 89 | 132 | 2e-14 | 54.3 | Ring finger domain |
XP_057780675.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 89 | 132 | 2e-06 | 28.4 | zinc-RING finger domain |
XP_057780675.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 90 | 129 | 1.4e-07 | 32.1 | RING-type zinc-finger |
XP_057780675.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 90 | 131 | 1.7e-08 | 34.9 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。