Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004481`

染色体: Chr08 坐标: 54417793-54422340 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004481`
名称	SmilChr08G004481
描述	uncharacterized SmilChr08G004481
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	54417793 - 54422340 / `-`

ID 对照

NCBI Gene ID	`LOC130999206`
GeneID	`130999206`
locus_tag	`-`
NCBI Name	`LOC130999206`
原始查询	`SmilChr08G004481`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839313]; symbol=AT1G01920; hit=AT1G01920; species=arabidopsis; confidence=high
产物	SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839313]; symbol=AT1G01920; hit=AT1G01920; species=arabidopsis; confidence=high
Arabidopsis	`AT1G01920` (AT1G01920) SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839313] identity=59.2; qcov=0.992; evalue=0; confidence=high
Rice	`Os06g0127200` - identity=54.1; qcov=0.996; evalue=0; confidence=high
GO	GO:0016279 (protein-lysine N-methyltransferase activity); GO:0018026 (peptidyl-lysine monomethylation)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130999206

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057780690.1`
2	Cytosol	细胞质基质	0.80000	`XP_057780690.1`
3	Nucleus	细胞核	0.40000	`XP_057780689.1`
4	Chromosome	染色体	0.00000	`XP_057780689.1`
5	Centromere	着丝粒	0.00000	`XP_057780689.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:54417958`	`A`	`AAG`	2bp_insertion	frameshift_variant	42	A11,A18,A20,A4,A9,B107,B123,B124,B125,B127,B137,B14,B18,B21,B31,B40,B41,B44,B5,B56,B79,B89,B96,C13,C21,C25,C29,C31,C33,C34,C36,C50,C52,C54,C57,C60,C61,C73,C79,C85,D2,D6
`Chr8:54417961`	`GCA`	`G`	2bp_deletion	frameshift_variant	42	A11,A18,A20,A4,A9,B107,B123,B124,B125,B127,B137,B14,B18,B21,B31,B40,B41,B44,B5,B56,B79,B89,B96,C13,C21,C25,C29,C31,C33,C34,C36,C50,C52,C54,C57,C60,C61,C73,C79,C85,D2,D6
`Chr8:54418048`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A21
`Chr8:54418048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr8:54418209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:54418226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B67,C49
`Chr8:54418566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr8:54418602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B67,C49
`Chr8:54418652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,B82
`Chr8:54419005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr8:54419130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,C69,C70
`Chr8:54419163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B55,C23,C43,C69,C70

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057924707.1
GTGGCCAATTCAAAATTTACATAAGCTAAAGGGCCCCACGCAAACCCCATTATTCAAGAGCTGATTTTTATTTCTAAAACCTTCGGAATTCGGAGCTTCACAGTGCGATGGCTTCTGAAGAAGCCAAGCTCGAGCTTTTCCTTCAGTGGCTGAAGATCAATGGAGCGGAGTTACGGGGCTGTAGAATCAAATACTGCAACTCGAGTAAAGGGTTTGGAATTTTTTCATCCAATGATGTTCCTGATGGAATTTTTCTGGTG...

XM_057924706.1
GTGGCCAATTCAAAATTTACATAAGCTAAAGGGCCCCACGCAAACCCCATTATTCAAGAGCTGATTTTTATTTCTAAAACCTTCGGAATTCGGAGCTTCACAGTGCGATGGCTTCTGAAGAAGCCAAGCTCGAGCTTTTCCTTCAGTGGCTGAAGATCAATGGAGCGGAGTTACGGGGCTGTAGAATCAAATACTGCAACTCGAGTAAAGGGTTTGGAATTTTTTCATCCAATGATGTTCCTGATGGAATTTTTCTGGTG...

CDS

3 records

下载 CDS FASTA

LOC130999206
ATGGCTTCTGAAGAAGCCAAGCTCGAGCTTTTCCTTCAGTGGCTGAAGATCAATGGAGCGGAGTTACGGGGCTGTAGAATCAAATACTGCAACTCGAGTAAAGGGTTTGGAATTTTTTCATCCAATGATGTTCCTGATGGAATTTTTCTGGTGATTCCGCTTGATCTGGCAATAACTCCGATGAAGGTGCTAGAAGATCCATTAATTGGACCTGCGTGTAGGTCAATGTTTGAGGAAGGGGAAGTAGATGACCGATTCTT...

Protein

3 records

下载 Protein FASTA

XP_057780689.1
MASEEAKLELFLQWLKINGAELRGCRIKYCNSSKGFGIFSSNDVPDGIFLVIPLDLAITPMKVLEDPLIGPACRSMFEEGEVDDRFLMMLFLTVERLRKNSTWKPYLDMLPTEFGSTLWFTDDDLLELKGTTLHRATELLKKSLKTLFDEKVKKLAEKLLVLAGNPESEVRFEDFLWANSIFWTRALNIPFPSSYVFRTGSSNAPGASTNSTEKLANGENGKSPEMNKSSQVSGSESTSRGDTIWVEGLVPGIDFCNHDL...

XP_057780690.1
MASEEAKLELFLQWLKINGAELRGCRIKYCNSSKGFGIFSSNDVPDGIFLVIPLDLAITPMKVLEDPLIGPACRSMFEEGEVDDRFLMMLFLTVERLRKNSTWKPYLDMLPTEFGSTLWFTDDDLLELKGTTLHRATELLKKSLKTLFDEKVKKLAEKLLVLAGNPESEVRFEDFLWANSIFWTRALNIPFPSSYVFRTGSSNAPGASTNSTEKLANGENAPEMNKSSQVSGSESTSRGDTIWVEGLVPGIDFCNHDLKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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