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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004486

染色体: Chr08 坐标: 54458869-54462507 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004486
名称SmilChr08G004486
描述pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向54458869 - 54462507 / +

ID 对照

NCBI Gene IDLOC130999212
GeneID130999212
locus_tag-
NCBI NameLOC130999212
原始查询SmilChr08G004486

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like
产物pentatricopeptide repeat-containing protein At2g03880%2C mitochondrial-like
ArabidopsisAT2G03880 (REME1)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814914]
identity=66.6; qcov=0.945; evalue=0; confidence=high
RiceOs10g0444500
-
identity=39.5; qcov=0.904; evalue=2.11e-164; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:130999212

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780697.1
2 Nucleus 细胞核 0.00000 XP_057780697.1
3 Chromosome 染色体 0.00000 XP_057780697.1
4 Centromere 着丝粒 0.00000 XP_057780697.1
5 Chromatin 染色质 0.00000 XP_057780697.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:54460119 C T EMS_canonical_SNV CDS_variant 4 B128,B30,B37,C58
Chr8:54460161 C T EMS_canonical_SNV stop_gained 1 A21
Chr8:54460161 C T EMS_canonical_SNV CDS_variant 1 A21
Chr8:54460257 C T EMS_canonical_SNV CDS_variant 1 B64
Chr8:54460258 G A EMS_canonical_SNV CDS_variant 1 B88
Chr8:54460427 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:54460580 C T EMS_canonical_SNV CDS_variant 2 A23,C69
Chr8:54460595 G A EMS_canonical_SNV CDS_variant 4 B4,B88,B98,C36
Chr8:54460750 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:54460784 C T EMS_canonical_SNV CDS_variant 2 C44,C85
Chr8:54460818 G A EMS_canonical_SNV CDS_variant 1 C87
Chr8:54460994 G A EMS_canonical_SNV CDS_variant 1 B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780697.1
649 aa
N
1
324
649
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_2
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 119-146 aa PF13812 PPR_3 142-190 aa PF13041 PPR_2 144-190 aa PF01535 PPR 147-177 aa PF01535 PPR 217-241 aa PF13041 PPR_2 243-289 aa PF01535 PPR 245-275 aa PF01535 PPR 316-342 aa PF01535 PPR 344-371 aa PF01535 PPR 416-442 aa PF13041 PPR_2 417-456 aa PF20431 E_motif 459-521 aa PF01535 PPR 482-511 aa PF14432 DYW_deaminase 557-649 aa
XP_057780699.1
649 aa
N
1
324
649
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_2
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 119-146 aa PF13812 PPR_3 142-190 aa PF13041 PPR_2 144-190 aa PF01535 PPR 147-177 aa PF01535 PPR 217-241 aa PF13041 PPR_2 243-289 aa PF01535 PPR 245-275 aa PF01535 PPR 316-342 aa PF01535 PPR 344-371 aa PF01535 PPR 416-442 aa PF13041 PPR_2 417-456 aa PF20431 E_motif 459-521 aa PF01535 PPR 482-511 aa PF14432 DYW_deaminase 557-649 aa
XP_057780700.1
649 aa
N
1
324
649
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_2
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 119-146 aa PF13812 PPR_3 142-190 aa PF13041 PPR_2 144-190 aa PF01535 PPR 147-177 aa PF01535 PPR 217-241 aa PF13041 PPR_2 243-289 aa PF01535 PPR 245-275 aa PF01535 PPR 316-342 aa PF01535 PPR 344-371 aa PF01535 PPR 416-442 aa PF13041 PPR_2 417-456 aa PF20431 E_motif 459-521 aa PF01535 PPR 482-511 aa PF14432 DYW_deaminase 557-649 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780697.1 Pfam PF01535 PPR Repeat 119 146 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF13812 PPR_3 Repeat 142 190 8.9e-26 90.5 Pentatricopeptide repeat domain
XP_057780697.1 Pfam PF13041 PPR_2 Repeat 144 190 2.9e-61 204.1 PPR repeat family
XP_057780697.1 Pfam PF01535 PPR Repeat 147 177 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF01535 PPR Repeat 217 241 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF13041 PPR_2 Repeat 243 289 2.9e-61 204.1 PPR repeat family
XP_057780697.1 Pfam PF01535 PPR Repeat 245 275 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF01535 PPR Repeat 316 342 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF01535 PPR Repeat 344 371 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF01535 PPR Repeat 416 442 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF13041 PPR_2 Repeat 417 456 2.9e-61 204.1 PPR repeat family
XP_057780697.1 Pfam PF20431 E_motif Repeat 459 521 4.6e-20 72.4 E motif
XP_057780697.1 Pfam PF01535 PPR Repeat 482 511 1.8e-48 160.2 PPR repeat
XP_057780697.1 Pfam PF14432 DYW_deaminase Domain 557 649 5.3e-37 126.2 DYW family of nucleic acid deaminases
XP_057780699.1 Pfam PF01535 PPR Repeat 119 146 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF13812 PPR_3 Repeat 142 190 8.9e-26 90.5 Pentatricopeptide repeat domain
XP_057780699.1 Pfam PF13041 PPR_2 Repeat 144 190 2.9e-61 204.1 PPR repeat family
XP_057780699.1 Pfam PF01535 PPR Repeat 147 177 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF01535 PPR Repeat 217 241 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF13041 PPR_2 Repeat 243 289 2.9e-61 204.1 PPR repeat family
XP_057780699.1 Pfam PF01535 PPR Repeat 245 275 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF01535 PPR Repeat 316 342 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF01535 PPR Repeat 344 371 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF01535 PPR Repeat 416 442 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF13041 PPR_2 Repeat 417 456 2.9e-61 204.1 PPR repeat family
XP_057780699.1 Pfam PF20431 E_motif Repeat 459 521 4.6e-20 72.4 E motif
XP_057780699.1 Pfam PF01535 PPR Repeat 482 511 1.8e-48 160.2 PPR repeat
XP_057780699.1 Pfam PF14432 DYW_deaminase Domain 557 649 5.3e-37 126.2 DYW family of nucleic acid deaminases
XP_057780700.1 Pfam PF01535 PPR Repeat 119 146 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF13812 PPR_3 Repeat 142 190 8.9e-26 90.5 Pentatricopeptide repeat domain
XP_057780700.1 Pfam PF13041 PPR_2 Repeat 144 190 2.9e-61 204.1 PPR repeat family
XP_057780700.1 Pfam PF01535 PPR Repeat 147 177 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF01535 PPR Repeat 217 241 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF13041 PPR_2 Repeat 243 289 2.9e-61 204.1 PPR repeat family
XP_057780700.1 Pfam PF01535 PPR Repeat 245 275 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF01535 PPR Repeat 316 342 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF01535 PPR Repeat 344 371 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF01535 PPR Repeat 416 442 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF13041 PPR_2 Repeat 417 456 2.9e-61 204.1 PPR repeat family
XP_057780700.1 Pfam PF20431 E_motif Repeat 459 521 4.6e-20 72.4 E motif
XP_057780700.1 Pfam PF01535 PPR Repeat 482 511 1.8e-48 160.2 PPR repeat
XP_057780700.1 Pfam PF14432 DYW_deaminase Domain 557 649 5.3e-37 126.2 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057924714.1
AAATAAATTCATAAATTAAAAACACTCTTTTAACACAAAATTAATAAAAGTCATCTAATCTCTTAATCACTATCCTTATACTTTATCCACATCACATTTTTCAGCATTGCCCCAGCCACGCCTCCAATCTATTCTCCATTTCGAAAACCCTAGTCCTCCTCCTCCCTACCATTTCTCCTCCACCCCGGCGCCTCTCTGACCGGCGACCGCCCCCACCCCGGCGTTTCCTCCGCGCCGCTTCTCCCCTCCAGCACGAGCAG...
XM_057924717.1
AAATAAATTCATAAATTAAAAACACTCTTTTAACACAAAATTAATAAAAGTCATCTAATCTCTTAATCACTATCCTTATACTTTATCCACATCACATTTTTCAGCATTGCCCCAGCCACGCCTCCAATCTATTCTCCATTTCGAAAACCCTAGTCCTCCTCCTCCCTACCATTTCTCCTCCACCCCGGCGCCTCTCTGACCGGCGACCGCCCCCACCCCGGCGTTTCCTCCGCGCCGCTTCTCCCCTCCAGCACGAGCAG...

CDS

3 records

下载 CDS FASTA
LOC130999212
ATGAAAATTATGTCAAGATTCAAATGTTACAGCATCACCTTGCGGACTACTCCCATAGCTCCTCAGCTTCCGAGGTTCTATTCTGTGGAGGTATCTGAGTCGAGGGCTAGGCCCAGGGCGTCGTCAAGTAATCACCAAGATATAGTCAATGGGTTCTCCGCGTATTGCTATCAAAAGGACCTTCCCAATGCAATGAAAGCATTGGACTCTATGCATAAACACAAGCTATGGGCAGACTCAGTCACTTACGCGGAGCTCAT...
LOC130999212
ATGAAAATTATGTCAAGATTCAAATGTTACAGCATCACCTTGCGGACTACTCCCATAGCTCCTCAGCTTCCGAGGTTCTATTCTGTGGAGGTATCTGAGTCGAGGGCTAGGCCCAGGGCGTCGTCAAGTAATCACCAAGATATAGTCAATGGGTTCTCCGCGTATTGCTATCAAAAGGACCTTCCCAATGCAATGAAAGCATTGGACTCTATGCATAAACACAAGCTATGGGCAGACTCAGTCACTTACGCGGAGCTCAT...

Protein

3 records

下载 Protein FASTA
XP_057780697.1
MKIMSRFKCYSITLRTTPIAPQLPRFYSVEVSESRARPRASSSNHQDIVNGFSAYCYQKDLPNAMKALDSMHKHKLWADSVTYAELIKCCIARGAVKQGKEVHHHVFSNGYEPKTFLINILVNMYVKFNLLDEAQLLFERMLERNVVSWTTMIAAYSNSEHKCRALRMLIMMLRDGVRPNMYTYSSVLRASEEISTLKQLHCCIIKVGLELDVFVRSALIDVYCKWGEPKAALYIFDAMGTSDIVVWNSIIGGFSQNSDG...
XP_057780699.1
MKIMSRFKCYSITLRTTPIAPQLPRFYSVEVSESRARPRASSSNHQDIVNGFSAYCYQKDLPNAMKALDSMHKHKLWADSVTYAELIKCCIARGAVKQGKEVHHHVFSNGYEPKTFLINILVNMYVKFNLLDEAQLLFERMLERNVVSWTTMIAAYSNSEHKCRALRMLIMMLRDGVRPNMYTYSSVLRASEEISTLKQLHCCIIKVGLELDVFVRSALIDVYCKWGEPKAALYIFDAMGTSDIVVWNSIIGGFSQNSDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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