Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004494

染色体: Chr08 坐标: 54572282-54573255 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004494
名称SmilChr08G004494
描述uncharacterized SmilChr08G004494
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向54572282 - 54573255 / -

ID 对照

NCBI Gene IDLOC130998691
GeneID130998691
locus_tag-
NCBI NameLOC130998691
原始查询SmilChr08G004494

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
产物DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
ArabidopsisAT1G43760 (AT1G43760)
DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]
identity=30.3; qcov=0.89; evalue=4.46e-22; confidence=low
RiceOs06g0205337
-
identity=31.2; qcov=0.794; evalue=5.1e-19; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130998691

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057780084.1
2 Nucleus 细胞核 0.60000 XP_057780084.1
3 Cytosol 细胞质基质 0.40000 XP_057780084.1
4 Chromosome 染色体 0.00000 XP_057780084.1
5 Centromere 着丝粒 0.00000 XP_057780084.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:54572327 G A EMS_canonical_SNV CDS_variant 5 A21,B66,B75,C32,C85
Chr8:54572328 G A EMS_canonical_SNV CDS_variant 2 B12,C53
Chr8:54572339 C T EMS_canonical_SNV CDS_variant 1 B25
Chr8:54572355 C T EMS_canonical_SNV CDS_variant 4 A2,B23,C32,C68
Chr8:54572387 G A EMS_canonical_SNV CDS_variant 1 C42
Chr8:54572409 G A EMS_canonical_SNV CDS_variant 3 B101,B117,C14
Chr8:54572412 C T EMS_canonical_SNV CDS_variant 2 B26,C13
Chr8:54572422 G A EMS_canonical_SNV stop_gained 2 B117,C9
Chr8:54572422 G A EMS_canonical_SNV CDS_variant 2 B117,C9
Chr8:54572424 G GCA 2bp_insertion frameshift_variant 1 B117
Chr8:54572424 G GCA 2bp_insertion CDS_variant 1 B117
Chr8:54572427 AGT A 2bp_deletion frameshift_variant 1 B117

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924101.1
ATGTGGAACCCTGCTATCTTCTCTAGCTCCAGTCAATGGGATATTCCGGGAGCATTAATCGTGAACGGTAGGTGGGCTGCAGGGGATTTCAACTCTATTACATTTGGAAATGAAAGAGTTGGAAGGGGTTTACAATTCTCGACTAGGGATATGCAGGCTTTCGATAACTTCATTAGGGCAAATGATTTGGTGGAAATCAGGTTACAAGGAAGGACGTTTACGTGGTACCAACCCAATGGGCAATGCAAGTCGAAGCTGGA...

CDS

1 records

下载 CDS FASTA
LOC130998691
ATGTGGAACCCTGCTATCTTCTCTAGCTCCAGTCAATGGGATATTCCGGGAGCATTAATCGTGAACGGTAGGTGGGCTGCAGGGGATTTCAACTCTATTACATTTGGAAATGAAAGAGTTGGAAGGGGTTTACAATTCTCGACTAGGGATATGCAGGCTTTCGATAACTTCATTAGGGCAAATGATTTGGTGGAAATCAGGTTACAAGGAAGGACGTTTACGTGGTACCAACCCAATGGGCAATGCAAGTCGAAGCTGGA...

Protein

1 records

下载 Protein FASTA
XP_057780084.1
MWNPAIFSSSSQWDIPGALIVNGRWAAGDFNSITFGNERVGRGLQFSTRDMQAFDNFIRANDLVEIRLQGRTFTWYQPNGQCKSKLDRFLVNDKWLEVWPQTKARGLQRTISDHCPILMETKVMDWGPKPFRFINAWTSHPDFEEVVRESWNRSGIRGWSCFVFKEKMKRLKNDLKKWNKSTFGVIDENIESLRDEIQKWDNIDDTFGLQEDDIIKRNEAGAKLIMQLKNKDSLLSQKARTRWLLDGDVNSGFFHKVIRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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