Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004508`

染色体: Chr08 坐标: 54710999-54721878 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004508`
名称	SmilChr08G004508
描述	uncharacterized SmilChr08G004508
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	54710999 - 54721878 / `+`

ID 对照

NCBI Gene ID	`LOC130999231`
GeneID	`130999231`
locus_tag	`-`
NCBI Name	`LOC130999231`
原始查询	`SmilChr08G004508`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806]; symbol=RPP13; hit=AT3G46530; species=arabidopsis; confidence=low
产物	NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806]; symbol=RPP13; hit=AT3G46530; species=arabidopsis; confidence=low
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.1; qcov=0.346; evalue=2.39e-46; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=27.1; qcov=0.41; evalue=5.93e-45; confidence=low
GO	GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:130999231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057780722.1`
2	Cytosol	细胞质基质	0.20000	`XP_057780722.1`
3	Nucleus	细胞核	0.00000	`XP_057780722.1`
4	Chromosome	染色体	0.00000	`XP_057780722.1`
5	Centromere	着丝粒	0.00000	`XP_057780722.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:54711084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,B2
`Chr8:54711135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,C14
`Chr8:54711151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,B80
`Chr8:54711215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B130
`Chr8:54711228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B84,C16,C33,C45
`Chr8:54711404`	`G`	`GT`	1bp_insertion	frameshift_variant	1	B7
`Chr8:54711404`	`G`	`GT`	1bp_insertion	CDS_variant	1	B7
`Chr8:54711436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr8:54711461`	`AT`	`A`	1bp_deletion	frameshift_variant	4	A7,B132,B139,B86
`Chr8:54711461`	`AT`	`A`	1bp_deletion	CDS_variant	4	A7,B132,B139,B86
`Chr8:54711591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr8:54711640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780722.1

1837 aa

918

1837

NB-ARC

WHD_DRP

NB-ARC

PF00931 NB-ARC 157-321 aa PF00931 NB-ARC 442-603 aa PF23559 WHD_DRP 685-730 aa PF00931 NB-ARC 1330-1494 aa PF00931 NB-ARC 1613-1766 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780722.1`	Pfam	`PF00931`	NB-ARC	Domain	157	321	3.1e-95	317.4	NB-ARC domain
`XP_057780722.1`	Pfam	`PF00931`	NB-ARC	Domain	442	603	3.1e-95	317.4	NB-ARC domain
`XP_057780722.1`	Pfam	`PF23559`	WHD_DRP	Domain	685	730	2.7e-08	34.4	Disease resistance protein Winged helix domain
`XP_057780722.1`	Pfam	`PF00931`	NB-ARC	Domain	1330	1494	3.1e-95	317.4	NB-ARC domain
`XP_057780722.1`	Pfam	`PF00931`	NB-ARC	Domain	1613	1766	3.1e-95	317.4	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924739.1
AACTCAATATAATTGCCATCAATTCATCCCTAGCTGTGCAGAGTGTGTGAGCATAGATGGCTTATGCTGCAGTGATTTCCCTTAAGCAAACAATACAACGCCTTCTAAATTCTTCTCGATTCTCTCAAGAAAGCTTGCGATCTGCCTCCGATGAGGCGGCATCTCTACAGAGAGTCCTGAAAAGACTCGACGATCATGGCGGAGGCGGAGGTGGAGGCGAGAGGTTGGAGGCTTTGGATTGCCAGATGAGAGAGGCGGCG...

CDS

1 records

下载 CDS FASTA

LOC130999231
ATGGCTTATGCTGCAGTGATTTCCCTTAAGCAAACAATACAACGCCTTCTAAATTCTTCTCGATTCTCTCAAGAAAGCTTGCGATCTGCCTCCGATGAGGCGGCATCTCTACAGAGAGTCCTGAAAAGACTCGACGATCATGGCGGAGGCGGAGGTGGAGGCGAGAGGTTGGAGGCTTTGGATTGCCAGATGAGAGAGGCGGCGAGCAAACTTGAAGATTTTCTGATACTCCATCAATCAGATGACGGCGAAGATGAATC...

Protein

1 records

下载 Protein FASTA

XP_057780722.1
MAYAAVISLKQTIQRLLNSSRFSQESLRSASDEAASLQRVLKRLDDHGGGGGGGERLEALDCQMREAASKLEDFLILHQSDDGEDESVISSEMMRWFAETAKKLREDYAAELDKDDGGGGGGASSSEADDSDDADNMVGYSDELNDVKWHMRNAVRPDDWAAVATFGRPGTGRSYEAWEVFQYARQLQTFDCGVWVTVTPNTHRKNILRAIFNQALINLNYGGDRKVVTQDGAVLKGNDEDDEEFAIRANVVEILAGQRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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