Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004524`

染色体: Chr08 坐标: 54801263-54808007 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004524`
名称	SmilChr08G004524
描述	uncharacterized SmilChr08G004524
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	54801263 - 54808007 / `-`

ID 对照

NCBI Gene ID	`LOC130999241`
GeneID	`130999241`
locus_tag	`-`
NCBI Name	`LOC130999241`
原始查询	`SmilChr08G004524`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835949]; symbol=AT5G58370; hit=AT5G58370; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835949]; symbol=AT5G58370; hit=AT5G58370; species=arabidopsis; confidence=high
Arabidopsis	`AT5G58370` (AT5G58370) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835949] identity=76; qcov=0.897; evalue=1.86e-169; confidence=high
Rice	`Os03g0816400` - identity=71.3; qcov=0.9; evalue=6.06e-159; confidence=high
GO	GO:0005525 (GTP binding)
KEGG	-
Pfam	PF01926 (MMR_HSR1)
InterPro	-
eggNOG	-
NR	GeneID:130999241

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780734.1`
2	Mitochondrion	线粒体	0.80000	`XP_057780737.1`
3	Nucleolus	核仁	0.60000	`XP_057780734.1`
4	Mitochondrion matrix	线粒体基质	0.60000	`XP_057780737.1`
5	Cytosol	细胞质基质	0.20000	`XP_057780734.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:54803610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr8:54805084`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr8:54805101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr8:54805150`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B5,B95
`Chr8:54805150`	`AT`	`A`	1bp_deletion	CDS_variant	2	B5,B95
`Chr8:54806024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr8:54806029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B139,B85,C63
`Chr8:54806297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B17,C43
`Chr8:54806299`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A21
`Chr8:54806299`	`AC`	`A`	1bp_deletion	CDS_variant	1	A21
`Chr8:54806320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B8,C79
`Chr8:54806999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B51,B7,C28,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780734.1

374 aa

187

374

MMR_HSR1

PF01926 MMR_HSR1 199-317 aa

XP_057780735.1

374 aa

187

374

MMR_HSR1

PF01926 MMR_HSR1 199-317 aa

XP_057780736.1

374 aa

187

374

MMR_HSR1

PF01926 MMR_HSR1 199-317 aa

XP_057780737.1

349 aa

174

349

MMR_HSR1

PF01926 MMR_HSR1 174-292 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780734.1`	Pfam	`PF01926`	MMR_HSR1	Family	199	317	2.5e-19	70.2	50S ribosome-binding GTPase
`XP_057780735.1`	Pfam	`PF01926`	MMR_HSR1	Family	199	317	2.5e-19	70.2	50S ribosome-binding GTPase
`XP_057780736.1`	Pfam	`PF01926`	MMR_HSR1	Family	199	317	2.5e-19	70.2	50S ribosome-binding GTPase
`XP_057780737.1`	Pfam	`PF01926`	MMR_HSR1	Family	174	292	2.3e-19	70.3	50S ribosome-binding GTPase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057924753.1
CGTCTGCACCCGCCGCCCTCTCCGTCTGCCTCTCCGTCTGCTGCTGCCGTCGACAGCCTCTCCATCTGCTGCTGCCGTCAACGTCTGCCAGGCTCGTCGCACGCCGCCGGTCGCCCTCCGTCTGAATCATAGACCTTGAAGAAGACGAAGAGTTTGGTTGCGCTTTGCACATAGCGCGCCAGAGAAAAGAAAACGAGGGTGTCCACTAGGCCATCTCTAGGGAAGTGAATCACTTGGAAAGGATTATGAATTTAAGGTCT...

XM_057924752.1
CGTCTGCACCCGCCGCCCTCTCCGTCTGCCTCTCCGTCTGCTGCTGCCGTCGACAGCCTCTCCATCTGCTGCTGCCGTCAACGTCTGCCAGGCTCGTCGCACGCCGCCGGTCGCCCTCCGTCTGAATCATAGACCTTGAAGAAGACGAAGAGTTTGGTTGCGCTTTGCACATAGCGCGCCAGAGAAAAGAAAACGAGGGTGTCCACTAGGCCATCTCTAGGGAAGTGAATCACTTGGAAAGGATTATGAATTTAAGGTCT...

CDS

4 records

下载 CDS FASTA

LOC130999241
ATGAAAGCTCCTTTGGCCACACAAAAGGAGTTGAATCAGAGAATAAATGCAGTTGGTTCTGTCCGTCACAATAGAAAGGATCAGAGAATGAAGGCCTTGGTTAATGGTTCAGATTTAACAGAGGCACCACCTAAGAAGAAAAAACGAGGTATCCGGATAGATCCTTATGATACATCAAACAAGAGATTGGATGATAGCATATCTGATCAAGGTAATAATCAGGGGAAGGTGGATGAGACAGAAAGCAGTGGTTCTCAAAT...

LOC130999241
ATGGGGCGTGCTGATAAGCCAAAACATGTTAGAGACAATGGCTTAGGGAATGTAATATCAAAGATAAGTGATAACAGGAAAGCTCCTTTGGCCACACAAAAGGAGTTGAATCAGAGAATAAATGCAGTTGGTTCTGTCCGTCACAATAGAAAGGATCAGAGAATGAAGGCCTTGGTTAATGGTTCAGATTTAACAGAGGCACCACCTAAGAAGAAAAAACGAGGTATCCGGATAGATCCTTATGATACATCAAACAAGAG...

Protein

4 records

下载 Protein FASTA

XP_057780734.1
MGRADKPKHVRDNGLGNVISKISDNRKAPLATQKELNQRINAVGSVRHNRKDQRMKALVNGSDLTEAPPKKKKRGIRIDPYDTSNKRLDDSISDQGNNQGKVDETESSGSQMSKNAQFRAICPSSSILSFVEDNLLGRRREIVFRRAGYNIELPASLDNIPFSTTPERERIEVPAFRNKLEFFAAAKISSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQSINFFKLGPKLCMVDLPGYGFAYAKE...

XP_057780735.1
MGRADKPKHVRDNGLGNVISKISDNRKAPLATQKELNQRINAVGSVRHNRKDQRMKALVNGSDLTEAPPKKKKRGIRIDPYDTSNKRLDDSISDQGNNQGKVDETESSGSQMSKNAQFRAICPSSSILSFVEDNLLGRRREIVFRRAGYNIELPASLDNIPFSTTPERERIEVPAFRNKLEFFAAAKISSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQSINFFKLGPKLCMVDLPGYGFAYAKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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