当前解析结果
SmilChr08G004557| 统一新 Gene ID | SmilChr08G004557 |
|---|---|
| 名称 | SmilChr08G004557 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55172533 - 55175139 / + |
| NCBI Gene ID | LOC130998716 |
|---|---|
| GeneID | 130998716 |
| locus_tag | - |
| NCBI Name | LOC130998716 |
| 原始查询 | SmilChr08G004557 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.4; qcov=0.991; evalue=3.33e-60; confidence=low |
| Rice | Os07g0186500- identity=29.5; qcov=0.961; evalue=5.88e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998716 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057780109.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057780109.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057780109.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780109.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780109.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55172586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,C46 |
Chr8:55172691 |
C |
CA |
1bp_insertion | frameshift_variant | 53 | A11,A2,A25,A7,B105,B111,B114,B117,B119,B121,B123,B124,B128,B129,B13,B139,B17,B18,B19,B45,B52,B6,B64,B65,B67,B81,B82,B83,B84,B86,B9,B91,B94,B95,C11,C13,C2,C20,C24,C25,C34,C40,C41,C54,C61,C62,C63,C73,C74,C79,D11,D7,D8 |
Chr8:55172694 |
AG |
A |
1bp_deletion | frameshift_variant | 52 | A11,A2,A25,B105,B111,B114,B117,B119,B121,B123,B124,B128,B129,B13,B139,B17,B18,B19,B45,B52,B6,B64,B65,B67,B81,B82,B83,B84,B86,B9,B91,B94,B95,C11,C13,C2,C20,C24,C25,C34,C40,C41,C54,C61,C62,C63,C73,C74,C79,D11,D7,D8 |
Chr8:55172835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B41,B83 |
Chr8:55172867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr8:55172868 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B83 |
Chr8:55172868 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B83 |
Chr8:55172878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B83,C81 |
Chr8:55172881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,D9 |
Chr8:55172888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B83 |
Chr8:55172909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C3 |
Chr8:55172910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780109.1PF00931
NB-ARC 148-312 aa
PF23559
WHD_DRP 395-465 aa
PF23598
LRR_14 569-791 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780109.1 |
Pfam | PF00931 |
NB-ARC | Domain | 148 | 312 | 1.9e-34 | 119.4 | NB-ARC domain |
XP_057780109.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 395 | 465 | 2.5e-17 | 63.4 | Disease resistance protein Winged helix domain |
XP_057780109.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 569 | 791 | 7.7e-15 | 55.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。