Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004568`

染色体: Chr08 坐标: 55260851-55265370 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004568`
名称	SmilChr08G004568
描述	uncharacterized SmilChr08G004568
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	55260851 - 55265370 / `-`

ID 对照

NCBI Gene ID	`LOC130999274`
GeneID	`130999274`
locus_tag	`-`
NCBI Name	`LOC130999274`
原始查询	`SmilChr08G004568`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-glucose pyrophosphorylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843830]; symbol=AT1G74910; hit=AT1G74910; species=arabidopsis; confidence=high
产物	ADP-glucose pyrophosphorylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843830]; symbol=AT1G74910; hit=AT1G74910; species=arabidopsis; confidence=high
Arabidopsis	`AT1G74910` (AT1G74910) ADP-glucose pyrophosphorylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843830] identity=83.4; qcov=1; evalue=0; confidence=high
Rice	`Os03g0208900` (OsMPG2) - identity=83.9; qcov=1; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0009058 (biosynthetic process)
KEGG	smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00483 (NTP_transferase); PF25087 (GMPPB_C)
InterPro	-
eggNOG	-
NR	GeneID:130999274

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057780761.1`
2	Cytosol	细胞质基质	0.60000	`XP_057780761.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057780761.1`
4	Nucleus	细胞核	0.00000	`XP_057780761.1`
5	Chromosome	染色体	0.00000	`XP_057780761.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:55261006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:55261019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:55261171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:55261317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:55262087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B17
`Chr8:55262268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,C42,C61,D5
`Chr8:55262471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B9,C34
`Chr8:55262483`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B133
`Chr8:55262483`	`CG`	`C`	1bp_deletion	CDS_variant	1	B133
`Chr8:55263247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B123
`Chr8:55263395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B71,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780761.1

415 aa

208

415

NTP_transferase

GMPPB_C

PF00483 NTP_transferase 10-205 aa PF25087 GMPPB_C 297-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780761.1`	Pfam	`PF00483`	NTP_transferase	Family	10	205	3.8e-31	109.2	Nucleotidyl transferase
`XP_057780761.1`	Pfam	`PF25087`	GMPPB_C	Repeat	297	414	1.2e-37	128.8	GMPPB C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924778.1
ATTATATTCTTTTAAAAAAATTTAGAAATGATTTATAGCTAATTAACTAAAAATGAAAGAAACTAAACATTTGAGAATGAATAAGCATTAAGTAGGGAGGTTTCTTGACATTATGAAATTAAGTTTGTTTAAGAGAAAAAGAAACAAAAGACAGAAAGGTCTATTTTTCATAAAAATAAGTGCATACACAAATCAAATCAAATTCCATTTTTTAATGCGATCCACCACTTTTTAATATTCAAGAATCTCATCCAATTCTT...

CDS

1 records

下载 CDS FASTA

LOC130999274
ATGGGGAGTTCAGAAGAGAGAGTTGTGGCTGTGATCATGGTGGGTGGCCCCACTAAAGGGACCAGATTTAGGCCATTGTCACTTAATGTTCCAAAACCCCTCTTTCCATTGGCTGGGCAGCCAATGGTTAATCATCCTATATCTGCTTGCAAAAGGATACCAAATCTAGCACAGATCTACCTCATTGGTTTCTACGAGGAGCGTGAATTTGCACTGTTTGTCTCTTCCATATCCAATGAGCTCAGAGTTCCTGTCAGGTA...

Protein

1 records

下载 Protein FASTA

XP_057780761.1
MGSSEERVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVNHPISACKRIPNLAQIYLIGFYEEREFALFVSSISNELRVPVRYLKEDKPHGSAGGLYNFRDQIMEESPSHIFLLNCDVCCSFPLAEMLEAHTSYGGMGTILVIKVSPESASQFGELVADPVTNELLHYTEKPETFVSDRINCGVYIFTPDIFTAIQGVSSQRKDRATLRRVSSFEALQPANRSLPSDFVRLDQDILSPLAGKRQFYVYETTDYWEQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器