当前解析结果
SmilChr08G004575| 统一新 Gene ID | SmilChr08G004575 |
|---|---|
| 名称 | SmilChr08G004575 |
| 描述 | uncharacterized SmilChr08G004575 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55329999 - 55332770 / + |
| NCBI Gene ID | LOC130998721 |
|---|---|
| GeneID | 130998721 |
| locus_tag | - |
| NCBI Name | LOC130998721 |
| 原始查询 | SmilChr08G004575 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=26; qcov=0.163; evalue=2.35e-11; confidence=weak |
| Rice | Os08g0202300- identity=32.3; qcov=0.352; evalue=5.63e-54; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998721 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780114.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057780114.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780114.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780114.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780114.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55330012 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | B78 |
Chr8:55330012 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B78 |
Chr8:55330014 |
GCT |
G |
2bp_deletion | frameshift_variant | 1 | B78 |
Chr8:55330014 |
GCT |
G |
2bp_deletion | CDS_variant | 1 | B78 |
Chr8:55330019 |
A |
AGG |
2bp_insertion | frameshift_variant | 1 | B78 |
Chr8:55330019 |
A |
AGG |
2bp_insertion | CDS_variant | 1 | B78 |
Chr8:55330020 |
ACC |
A |
2bp_deletion | frameshift_variant | 1 | B78 |
Chr8:55330020 |
ACC |
A |
2bp_deletion | CDS_variant | 1 | B78 |
Chr8:55330024 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B78 |
Chr8:55330024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:55330034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B75,B78,D10 |
Chr8:55330040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780114.1PF00078
RVT_1 3-162 aa
PF17919
RT_RNaseH_2 225-323 aa
PF17917
RT_RNaseH 252-352 aa
PF13456
RVT_3 397-506 aa
PF17921
Integrase_H2C2 595-646 aa
PF00665
rve 662-759 aa
PF31073
DUF8803 861-922 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780114.1 |
Pfam | PF00078 |
RVT_1 | Domain | 3 | 162 | 1.1e-32 | 114.3 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057780114.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 225 | 323 | 3.6e-20 | 72.6 | RNase H-like domain found in reverse transcriptase |
XP_057780114.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 252 | 352 | 5.2e-15 | 56.2 | RNase H-like domain found in reverse transcriptase |
XP_057780114.1 |
Pfam | PF13456 |
RVT_3 | Domain | 397 | 506 | 5.7e-15 | 56.0 | Reverse transcriptase-like |
XP_057780114.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 595 | 646 | 1.4e-10 | 41.8 | Integrase zinc binding domain |
XP_057780114.1 |
Pfam | PF00665 |
rve | Domain | 662 | 759 | 2.3e-17 | 63.8 | Integrase core domain |
XP_057780114.1 |
Pfam | PF31073 |
DUF8803 | Domain | 861 | 922 | 4.2e-25 | 88.1 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。