当前解析结果
SmilChr08G004578| 统一新 Gene ID | SmilChr08G004578 |
|---|---|
| 名称 | SmilChr08G004578 |
| 描述 | pentatricopeptide repeat-containing protein At4g20770-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55371876 - 55372847 / + |
| NCBI Gene ID | LOC130998724 |
|---|---|
| GeneID | 130998724 |
| locus_tag | - |
| NCBI Name | LOC130998724 |
| 原始查询 | SmilChr08G004578 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g20770-like |
| 产物 | pentatricopeptide repeat-containing protein At4g20770-like |
| Arabidopsis | AT4G20770 (AT4G20770)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827825] identity=45.9; qcov=0.95; evalue=4.3e-76; confidence=high |
| Rice | Os03g0816600- identity=29.1; qcov=0.957; evalue=1.46e-42; confidence=low |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998724 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057780115.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780115.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780115.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780115.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780115.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55371890 |
TGC |
T |
2bp_deletion | frameshift_variant | 4 | B108,B126,C2,C49 |
Chr8:55371890 |
TGC |
T |
2bp_deletion | CDS_variant | 4 | B108,B126,C2,C49 |
Chr8:55371927 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B108,B126,C2,C49 |
Chr8:55371927 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B108,B126,C2,C49 |
Chr8:55372007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,B79,C25 |
Chr8:55372010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B66,B70,C56,D2 |
Chr8:55372013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C56,D11,D2 |
Chr8:55372053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:55372108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:55372142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:55372184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:55372313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780115.1PF01535
PPR 46-72 aa
PF12854
PPR_1 72-99 aa
PF01535
PPR 74-103 aa
PF01535
PPR 105-135 aa
PF01535
PPR 206-235 aa
PF01535
PPR 287-307 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780115.1 |
Pfam | PF01535 |
PPR | Repeat | 46 | 72 | 6.9e-28 | 95.6 | PPR repeat |
XP_057780115.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 72 | 99 | 2.8e-16 | 59.7 | PPR repeat |
XP_057780115.1 |
Pfam | PF01535 |
PPR | Repeat | 74 | 103 | 6.9e-28 | 95.6 | PPR repeat |
XP_057780115.1 |
Pfam | PF01535 |
PPR | Repeat | 105 | 135 | 6.9e-28 | 95.6 | PPR repeat |
XP_057780115.1 |
Pfam | PF01535 |
PPR | Repeat | 206 | 235 | 6.9e-28 | 95.6 | PPR repeat |
XP_057780115.1 |
Pfam | PF01535 |
PPR | Repeat | 287 | 307 | 6.9e-28 | 95.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。