Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004588`

染色体: Chr08 坐标: 55458283-55460500 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004588`
名称	SmilChr08G004588
描述	pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	55458283 - 55460500 / `-`

ID 对照

NCBI Gene ID	`LOC130999284`
GeneID	`130999284`
locus_tag	`-`
NCBI Name	`LOC130999284`
原始查询	`SmilChr08G004588`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
Arabidopsis	`AT1G12300` (AT1G12300) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784] identity=37.7; qcov=0.982; evalue=1.89e-135; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=31.7; qcov=0.872; evalue=4.37e-90; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999284

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780776.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780776.1`
3	Nucleus	细胞核	0.00000	`XP_057780776.1`
4	Chromosome	染色体	0.00000	`XP_057780776.1`
5	Centromere	着丝粒	0.00000	`XP_057780776.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:55458583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr8:55458710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,C49
`Chr8:55458734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C23
`Chr8:55458764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B36,B88,C4,C86
`Chr8:55458854`	`C`	`CGT`	2bp_insertion	frameshift_variant	1	D8
`Chr8:55458854`	`C`	`CGT`	2bp_insertion	CDS_variant	1	D8
`Chr8:55458858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B61,D8
`Chr8:55458863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B61,D8
`Chr8:55458873`	`TTA`	`T`	2bp_deletion	frameshift_variant	2	B16,B2
`Chr8:55458873`	`TTA`	`T`	2bp_deletion	CDS_variant	2	B16,B2
`Chr8:55458917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B15,B68,B71,B80
`Chr8:55458928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B133,C49,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780776.1

600 aa

300

600

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_3

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_2

PPR

PF13812 PPR_3 63-121 aa PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF13812 PPR_3 99-154 aa PF12854 PPR_1 140-170 aa PF01535 PPR 148-176 aa PF01535 PPR 187-211 aa PF13812 PPR_3 204-260 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-278 aa PF01535 PPR 253-282 aa PF13041 PPR_2 257-299 aa PF13812 PPR_3 274-332 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF13812 PPR_3 310-367 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF12854 PPR_1 351-376 aa PF13041 PPR_2 355-402 aa PF01535 PPR 358-386 aa PF13812 PPR_3 383-435 aa PF12854 PPR_1 386-419 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-422 aa PF12854 PPR_1 423-451 aa PF01535 PPR 428-458 aa PF13041 PPR_2 432-474 aa PF13812 PPR_3 450-507 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 461-509 aa PF01535 PPR 463-493 aa PF23276 TPR_24 468-577 aa PF13041 PPR_2 499-542 aa PF01535 PPR 500-528 aa PF01535 PPR 533-563 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	63	121	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	74	122	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	78	107	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	99	154	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	140	170	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	148	176	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	187	211	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	204	260	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	215	264	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	219	248	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	246	278	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	253	282	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	257	299	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	274	332	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	282	314	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	286	333	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	288	318	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	310	367	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	316	349	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	320	369	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	323	353	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	351	376	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	355	402	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	358	386	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	383	435	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	386	419	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	391	439	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	394	422	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	423	451	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	428	458	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	432	474	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF13812`	PPR_3	Repeat	450	507	1.4e-61	205.2	Pentatricopeptide repeat domain
`XP_057780776.1`	Pfam	`PF12854`	PPR_1	Repeat	456	487	4.2e-111	363.0	PPR repeat
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	461	509	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	463	493	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF23276`	TPR_24	Repeat	468	577	1.9e-33	115.9	Pentatricopeptide repeat-containing protein
`XP_057780776.1`	Pfam	`PF13041`	PPR_2	Repeat	499	542	1.4e-146	477.3	PPR repeat family
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	500	528	5.5e-87	280.9	PPR repeat
`XP_057780776.1`	Pfam	`PF01535`	PPR	Repeat	533	563	5.5e-87	280.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924793.1
CACACTTACAAAACAAGTCCAGAATCGCAAACTCCATCCGTTGCAATTTCAACCCTTTTTTCAGATTCAATCACAACTAATCTCGCAAGCGTCGCCCAACACTCTCCCTTTCTTCACATTAAATCTCACCGCCGATTAAAGATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCGATGGTCGCATAAATCGGGTATTATGTCTGCTCCATTCTCTCTCTTCTCTTCCAA...

CDS

1 records

下载 CDS FASTA

LOC130999284
ATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCGATGGTCGCATAAATCGGGTATTATGTCTGCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGATTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTGTTCTAATGTACAACAATCTTTTGAGTGTCACTGT...

Protein

1 records

下载 Protein FASTA

XP_057780776.1
MTSRRAAVFAIDLIHGTGFLYRWSHKSGIMSAPFSLFSSKAFQPKQPRIDFSCVKELNDAIGLFQKMKSMQPEPSVLMYNNLLSVTVKIEQYSFALYMFDEMLRMGVTVNVYTMNIAVNCCCLLKDIKSGFAVMGIFFKRGYEPNVATFTTLIKGLFLNHKVAEAGKLFNMLLRFRICEPNDIMIGTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYSALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYSSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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