当前解析结果
SmilChr08G004604| 统一新 Gene ID | SmilChr08G004604 |
|---|---|
| 名称 | SmilChr08G004604 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55620311 - 55621692 / - |
| NCBI Gene ID | LOC130998735 |
|---|---|
| GeneID | 130998735 |
| locus_tag | - |
| NCBI Name | LOC130998735 |
| 原始查询 | SmilChr08G004604 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=40; qcov=0.67; evalue=1.93e-17; confidence=low |
| Rice | Os06g0287000- identity=39.5; qcov=0.637; evalue=7.15e-18; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998735 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057780126.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057780126.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780126.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780126.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780126.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55620722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:55620733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B117,B125,B65,C49 |
Chr8:55620754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:55620766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,C62 |
Chr8:55620831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:55620843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:55620882 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A14,A6,A7,B108,B12,B129,B136,B138,B31,B6,B74,B86,B92,C13,C39,C45,C72,C81,D3 |
Chr8:55620892 |
CG |
C |
1bp_deletion | frameshift_variant | 20 | A14,A6,A7,B108,B12,B129,B136,B138,B31,B6,B74,B86,B92,C13,C15,C39,C45,C72,C81,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。