当前解析结果
SmilChr08G004605| 统一新 Gene ID | SmilChr08G004605 |
|---|---|
| 名称 | SmilChr08G004605 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55621823 - 55624558 / - |
| NCBI Gene ID | LOC130998736 |
|---|---|
| GeneID | 130998736 |
| locus_tag | - |
| NCBI Name | LOC130998736 |
| 原始查询 | SmilChr08G004605 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=39.9; qcov=0.385; evalue=9.36e-67; confidence=low |
| Rice | Os11g0633500- identity=32; qcov=0.518; evalue=3.58e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998736 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057780128.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057780128.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780128.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780128.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780128.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55621852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B124,B22,B38,B79,C48 |
Chr8:55621861 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | B78 |
Chr8:55621861 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | B78 |
Chr8:55621876 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B18,B25,D6 |
Chr8:55621876 |
T |
TC |
1bp_insertion | CDS_variant | 3 | B18,B25,D6 |
Chr8:55621878 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B122,B82 |
Chr8:55621878 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B122,B82 |
Chr8:55621937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,C48 |
Chr8:55621938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,C48 |
Chr8:55621940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,C48 |
Chr8:55622015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,C60 |
Chr8:55622030 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780128.1PF00931
NB-ARC 170-335 aa
PF23559
WHD_DRP 419-490 aa
PF23598
LRR_14 587-875 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780128.1 |
Pfam | PF00931 |
NB-ARC | Domain | 170 | 335 | 8e-42 | 143.5 | NB-ARC domain |
XP_057780128.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 419 | 490 | 1.4e-21 | 77.0 | Disease resistance protein Winged helix domain |
XP_057780128.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 587 | 875 | 4.1e-13 | 49.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。