Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004609`

染色体: Chr08 坐标: 55654209-55656716 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004609`
名称	SmilChr08G004609
描述	pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	55654209 - 55656716 / `-`

ID 对照

NCBI Gene ID	`LOC130999351`
GeneID	`130999351`
locus_tag	`-`
NCBI Name	`LOC130999351`
原始查询	`SmilChr08G004609`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g63330-like
产物	pentatricopeptide repeat-containing protein At1g63330-like
Arabidopsis	`AT1G62670` (RPF2) rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564] identity=36.5; qcov=0.931; evalue=2.56e-130; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=32.8; qcov=0.936; evalue=6.91e-110; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999351

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780859.1`
2	Chloroplast	叶绿体	0.40000	`XP_057780859.1`
3	Nucleus	细胞核	0.00000	`XP_057780859.1`
4	Chromosome	染色体	0.00000	`XP_057780859.1`
5	Centromere	着丝粒	0.00000	`XP_057780859.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:55654434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,A7,B40,C60,C62
`Chr8:55654761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:55654762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:55654798`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C85
`Chr8:55654798`	`GA`	`G`	1bp_deletion	CDS_variant	1	C85
`Chr8:55654816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr8:55654820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:55654825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C53
`Chr8:55654898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B73
`Chr8:55654900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:55654915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr8:55654986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,C45,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780859.1

636 aa

318

636

PPR_2

PPR

PPR_2

PPR_1

PPR_2

PPR

PPR_1

PPR_3

PPR_2

TPR_24

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

TPR_24

PPR_2

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF13041 PPR_2 36-85 aa PF01535 PPR 41-67 aa PF13041 PPR_2 106-156 aa PF12854 PPR_1 140-167 aa PF13041 PPR_2 142-193 aa PF01535 PPR 145-171 aa PF12854 PPR_1 177-205 aa PF13812 PPR_3 178-224 aa PF13041 PPR_2 179-228 aa PF23276 TPR_24 182-271 aa PF01535 PPR 183-212 aa PF13812 PPR_3 204-258 aa PF12854 PPR_1 210-242 aa PF13041 PPR_2 216-260 aa PF01535 PPR 217-243 aa PF13812 PPR_3 238-288 aa PF12854 PPR_1 247-278 aa PF13041 PPR_2 249-297 aa PF01535 PPR 252-280 aa PF13812 PPR_3 276-332 aa PF12854 PPR_1 282-309 aa PF13041 PPR_2 284-325 aa PF01535 PPR 287-316 aa PF12854 PPR_1 316-339 aa PF13041 PPR_2 319-346 aa PF01535 PPR 322-346 aa PF13812 PPR_3 349-399 aa PF12854 PPR_1 352-383 aa PF13041 PPR_2 354-402 aa PF01535 PPR 357-384 aa PF12854 PPR_1 387-418 aa PF01535 PPR 393-422 aa PF23276 TPR_24 394-485 aa PF13041 PPR_2 398-438 aa PF13812 PPR_3 413-474 aa PF12854 PPR_1 420-451 aa PF01535 PPR 427-457 aa PF13041 PPR_2 431-471 aa PF12854 PPR_1 455-486 aa PF13041 PPR_2 459-508 aa PF01535 PPR 462-492 aa PF13812 PPR_3 483-520 aa PF12854 PPR_1 490-521 aa PF13041 PPR_2 494-542 aa PF01535 PPR 497-527 aa PF23276 TPR_24 517-617 aa PF13812 PPR_3 518-572 aa PF12854 PPR_1 525-558 aa PF13041 PPR_2 529-578 aa PF01535 PPR 532-562 aa PF12854 PPR_1 560-593 aa PF13041 PPR_2 564-609 aa PF01535 PPR 567-597 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	36	85	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	41	67	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	106	156	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	140	167	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	142	193	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	145	171	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	177	205	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	178	224	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	179	228	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF23276`	TPR_24	Repeat	182	271	1.2e-38	132.7	Pentatricopeptide repeat-containing protein
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	183	212	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	204	258	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	210	242	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	216	260	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	217	243	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	238	288	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	247	278	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	249	297	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	252	280	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	276	332	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	282	309	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	284	325	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	287	316	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	316	339	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	319	346	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	322	346	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	349	399	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	352	383	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	354	402	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	357	384	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	387	418	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	393	422	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF23276`	TPR_24	Repeat	394	485	1.2e-38	132.7	Pentatricopeptide repeat-containing protein
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	398	438	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	413	474	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	420	451	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	427	457	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	431	471	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	455	486	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	459	508	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	462	492	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	483	520	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	490	521	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	494	542	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	497	527	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF23276`	TPR_24	Repeat	517	617	1.2e-38	132.7	Pentatricopeptide repeat-containing protein
`XP_057780859.1`	Pfam	`PF13812`	PPR_3	Repeat	518	572	7.3e-75	247.7	Pentatricopeptide repeat domain
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	525	558	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	529	578	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	532	562	3.9e-112	359.7	PPR repeat
`XP_057780859.1`	Pfam	`PF12854`	PPR_1	Repeat	560	593	3.3e-157	510.5	PPR repeat
`XP_057780859.1`	Pfam	`PF13041`	PPR_2	Repeat	564	609	3.8e-188	610.3	PPR repeat family
`XP_057780859.1`	Pfam	`PF01535`	PPR	Repeat	567	597	3.9e-112	359.7	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924876.1
TTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCTTTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGAATCTATACGTGAACCCAATGATGCCGTCGCTCTATTTCAGGATATGATGGGAACGGAGCCGCTTCCTTCTGTTAAGCTTTTCTCGAGATTGCTGAGTGCTGTG...

CDS

1 records

下载 CDS FASTA

LOC130999351
ATGAGGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGAATCTATACGTGAACCCAATGATGCCGTCGCTCTATTTCAGGATATGATGGGAACGGAGCCGCTTCCTTCTGTTAAGCTTTTCTCGAGATTGCTGAGTGCTGTGGTCAAGCTGAAACAATACTCTGCTGCACTTCATCTGTTCGAAAAAATGCTTCAAAGGGATGCTCCTGTAAATCACTACACGTTGAGTATTGCGATTGATTGCTATTGCAGACTCAA...

Protein

1 records

下载 Protein FASTA

XP_057780859.1
MRRHFSAYPRFDFESIREPNDAVALFQDMMGTEPLPSVKLFSRLLSAVVKLKQYSAALHLFEKMLQRDAPVNHYTLSIAIDCYCRLKRPDFGFANLGSFFKRGFEPTVVTFNTLVKGLLFVERIPEAAKLLGKLSAYQLCEPDEYTYSTIINGLCKAGDILQAIDLLCSLEKGKGSCKPDVYAYSAVIDGLCKNGKVDEALQLFSTLGDKGISPNVVTYSSIIEGLCKMKRMDEAEHVLKKMIADLVSPNVVTCNIFVDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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