当前解析结果
SmilChr08G004642| 统一新 Gene ID | SmilChr08G004642 |
|---|---|
| 名称 | SmilChr08G004642 |
| 描述 | uncharacterized SmilChr08G004642 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55933836 - 55935494 / - |
| NCBI Gene ID | LOC130999356 |
|---|---|
| GeneID | 130999356 |
| locus_tag | - |
| NCBI Name | LOC130999356 |
| 原始查询 | SmilChr08G004642 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low |
| 产物 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G64950 (AT5G64950)Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619] identity=28.1; qcov=0.911; evalue=4e-37; confidence=low |
| Rice | Os06g0225100- identity=28.2; qcov=0.869; evalue=1.3e-29; confidence=low |
| GO | GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02536 (mTERF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999356 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057780864.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780864.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780864.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780864.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780864.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55934196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,C22,C76 |
Chr8:55934307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C50 |
Chr8:55934548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C14 |
Chr8:55934580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B80,C43,C73 |
Chr8:55934589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr8:55934604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr8:55934653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,B87,C50 |
Chr8:55934681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr8:55934683 |
CT |
C |
1bp_deletion | frameshift_variant | 69 | A15,A20,A22,A24,A4,A7,B102,B109,B111,B112,B114,B115,B119,B123,B124,B128,B134,B135,B14,B16,B17,B20,B3,B45,B47,B49,B52,B54,B56,B57,B58,B78,B79,B82,B90,B92,B96,B97,B98,C1,C15,C20,C21,C25,C29,C34,C39,C47,C49,C5,C52,C56,C57,C6,C61,C64,C66,C67,C73,C74,C75,C77,C78,C79,C8,C86,D2,D4,D9 |
Chr8:55934812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C82,C85 |
Chr8:55934849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:55935153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780864.1PF02536
mTERF 48-203 aa
PF02536
mTERF 250-357 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780864.1 |
Pfam | PF02536 |
mTERF | Family | 48 | 203 | 6e-33 | 114.8 | mTERF |
XP_057780864.1 |
Pfam | PF02536 |
mTERF | Family | 250 | 357 | 6e-33 | 114.8 | mTERF |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。