当前解析结果
SmilChr08G004660| 统一新 Gene ID | SmilChr08G004660 |
|---|---|
| 名称 | SmilChr08G004660 |
| 描述 | 5-epiaristolochene 1,3-dihydroxylase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56082836 - 56084200 / - |
| NCBI Gene ID | LOC130998764 |
|---|---|
| GeneID | 130998764 |
| locus_tag | - |
| NCBI Name | LOC130998764 |
| 原始查询 | SmilChr08G004660 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 5-epiaristolochene 1,3-dihydroxylase-like |
| 产物 | 5-epiaristolochene 1%2C3-dihydroxylase-like |
| Arabidopsis | AT3G26320 (CYP71B36)cytochrome P450, family 71, subfamily B, polypeptide 36 [Source:NCBI gene (formerly Entrezgene);Acc:822236] identity=45.2; qcov=0.531; evalue=1.99e-22; confidence=medium |
| Rice | Os02g0184900- identity=35.2; qcov=0.74; evalue=1.9e-19; confidence=low |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998764 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057780153.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057780153.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780153.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780153.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780153.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56082843 |
TA |
T |
1bp_deletion | frameshift_variant | 34 | A20,A3,A7,B103,B111,B130,B17,B21,B30,B35,B37,B44,B52,B55,B62,B72,B78,B85,B86,B99,C19,C34,C38,C53,C56,C58,C61,C62,C79,D1,D10,D2,D3,D6 |
Chr8:56082856 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A20,B17,C19 |
Chr8:56082856 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B17,C19 |
Chr8:56082868 |
TTG |
T |
2bp_deletion | frameshift_variant | 1 | D10 |
Chr8:56082868 |
TTG |
T |
2bp_deletion | CDS_variant | 1 | D10 |
Chr8:56082895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B44 |
Chr8:56083032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C33 |
Chr8:56083081 |
AC |
A |
1bp_deletion | frameshift_variant | 4 | A6,B27,C40,C68 |
Chr8:56083081 |
AC |
A |
1bp_deletion | CDS_variant | 4 | A6,B27,C40,C68 |
Chr8:56083094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B132,B30,C71 |
Chr8:56083180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B86,C21,D10 |
Chr8:56083186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780153.1PF00067
p450 68-170 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780153.1 |
Pfam | PF00067 |
p450 | Domain | 68 | 170 | 4.9e-12 | 46.1 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。