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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004672

染色体: Chr08 坐标: 56217125-56219337 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004672
名称SmilChr08G004672
描述pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56217125 - 56219337 / +

ID 对照

NCBI Gene IDLOC130999320
GeneID130999320
locus_tag-
NCBI NameLOC130999320
原始查询SmilChr08G004672

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62670%2C mitochondrial-like
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=35.6; qcov=0.929; evalue=8.95e-134; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.8; qcov=0.883; evalue=9.76e-104; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999320

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780820.1
2 Chloroplast 叶绿体 0.20000 XP_057780820.1
3 Nucleus 细胞核 0.00000 XP_057780820.1
4 Chromosome 染色体 0.00000 XP_057780820.1
5 Centromere 着丝粒 0.00000 XP_057780820.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56217250 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:56217394 C T EMS_canonical_SNV CDS_variant 1 C74
Chr8:56217419 G A EMS_canonical_SNV CDS_variant 2 A1,C21
Chr8:56217558 G A EMS_canonical_SNV CDS_variant 2 A14,B54
Chr8:56217640 C T EMS_canonical_SNV CDS_variant 2 B79,C32
Chr8:56217755 G A EMS_canonical_SNV CDS_variant 1 B19
Chr8:56217815 G A EMS_canonical_SNV CDS_variant 1 C53
Chr8:56217880 C T EMS_canonical_SNV CDS_variant 2 B4,B73
Chr8:56217881 AAC A 2bp_deletion frameshift_variant 1 C81
Chr8:56217881 AAC A 2bp_deletion CDS_variant 1 C81
Chr8:56217885 T TGC 2bp_insertion frameshift_variant 1 C81
Chr8:56217885 T TGC 2bp_insertion CDS_variant 1 C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780820.1
674 aa
N
1
337
674
PPR_2
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
C
PF13041 PPR_2 76-125 aa PF01535 PPR 81-107 aa PF13041 PPR_2 146-196 aa PF12854 PPR_1 180-207 aa PF13041 PPR_2 182-233 aa PF01535 PPR 185-213 aa PF17177 PPR_long 188-332 aa PF12854 PPR_1 217-245 aa PF13812 PPR_3 217-264 aa PF13041 PPR_2 219-268 aa PF23276 TPR_24 221-311 aa PF01535 PPR 223-252 aa PF13812 PPR_3 243-297 aa PF12854 PPR_1 250-282 aa PF13041 PPR_2 254-303 aa PF01535 PPR 257-283 aa PF13812 PPR_3 278-336 aa PF12854 PPR_1 287-318 aa PF13041 PPR_2 289-337 aa PF01535 PPR 293-320 aa PF13812 PPR_3 316-373 aa PF12854 PPR_1 322-349 aa PF13041 PPR_2 324-373 aa PF01535 PPR 327-356 aa PF13812 PPR_3 347-405 aa PF12854 PPR_1 356-384 aa PF13041 PPR_2 359-406 aa PF01535 PPR 362-384 aa PF13812 PPR_3 392-443 aa PF13041 PPR_2 394-442 aa PF01535 PPR 397-424 aa PF13812 PPR_3 417-474 aa PF12854 PPR_1 427-458 aa PF01535 PPR 433-461 aa PF23276 TPR_24 434-526 aa PF13041 PPR_2 438-478 aa PF13812 PPR_3 452-513 aa PF12854 PPR_1 461-491 aa PF13041 PPR_2 464-511 aa PF01535 PPR 467-497 aa PF13812 PPR_3 488-547 aa PF12854 PPR_1 496-526 aa PF13041 PPR_2 499-548 aa PF01535 PPR 502-532 aa PF13812 PPR_3 523-565 aa PF12854 PPR_1 530-561 aa PF13041 PPR_2 534-581 aa PF01535 PPR 537-566 aa PF23276 TPR_24 550-650 aa PF13812 PPR_3 558-611 aa PF12854 PPR_1 567-597 aa PF13041 PPR_2 568-617 aa PF01535 PPR 571-601 aa PF13041 PPR_2 603-649 aa PF01535 PPR 606-636 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 76 125 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 81 107 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 146 196 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 180 207 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 182 233 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 185 213 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF17177 PPR_long Repeat 188 332 6.3e-30 104.9 Pentacotripeptide-repeat region of PRORP
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 217 245 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 217 264 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 219 268 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF23276 TPR_24 Repeat 221 311 3.7e-39 134.4 Pentatricopeptide repeat-containing protein
XP_057780820.1 Pfam PF01535 PPR Repeat 223 252 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 243 297 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 250 282 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 254 303 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 257 283 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 278 336 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 287 318 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 289 337 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 293 320 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 316 373 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 322 349 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 324 373 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 327 356 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 347 405 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 356 384 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 359 406 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 362 384 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 392 443 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 394 442 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 397 424 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 417 474 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 427 458 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF01535 PPR Repeat 433 461 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF23276 TPR_24 Repeat 434 526 3.7e-39 134.4 Pentatricopeptide repeat-containing protein
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 438 478 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 452 513 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 461 491 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 464 511 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 467 497 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 488 547 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 496 526 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 499 548 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 502 532 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 523 565 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 530 561 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 534 581 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 537 566 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF23276 TPR_24 Repeat 550 650 3.7e-39 134.4 Pentatricopeptide repeat-containing protein
XP_057780820.1 Pfam PF13812 PPR_3 Repeat 558 611 8.1e-86 282.8 Pentatricopeptide repeat domain
XP_057780820.1 Pfam PF12854 PPR_1 Repeat 567 597 1.8e-153 498.5 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 568 617 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 571 601 4.1e-112 359.6 PPR repeat
XP_057780820.1 Pfam PF13041 PPR_2 Repeat 603 649 1.5e-200 650.1 PPR repeat family
XP_057780820.1 Pfam PF01535 PPR Repeat 606 636 4.1e-112 359.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924837.1
TCTTCTCACAAAATCCTTTCTCGCATTCTTCCCCAATTCTTCAGCTTCCAACTTCAGGGCTCACAACTACAAAACCACGCCGCCATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCGGATTCGATTTTGAATCTATACGTGAACC...

CDS

1 records

下载 CDS FASTA
LOC130999320
ATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCGGATTCGATTTTGAATCTATACGTGAACCCAATGATGCCGTCGCTCTATTTCAGGATATGATGGGAACGGAGCCGCTTCCTTCTGTTAAGCTTTTCTCGAGATTGCTGAATGC...

Protein

1 records

下载 Protein FASTA
XP_057780820.1
MFLGRILSNSSSKFSTFAITSPHYQSFLLPSFHFDNASCQMRRHFSAYPGFDFESIREPNDAVALFQDMMGTEPLPSVKLFSRLLNAVVKLKQYSAALHLFEKMLQRDATVNHYTLSIAIDCYCRLKRPDFGFAILGSFFKRGFEPTVVTFNTLVKGLLFVERIPEAAKLLGKLSAYQLCEPDEYTYSTIINGLCKAGDILQAIDLLCSLEKRKGSCKPNVYAYNIVIDGLCKEGKVDDALQLFSSLGDKGISPNVVTYS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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