当前解析结果
SmilChr08G004678| 统一新 Gene ID | SmilChr08G004678 |
|---|---|
| 名称 | SmilChr08G004678 |
| 描述 | alpha N-terminal protein methyltransferase 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56268445 - 56271325 / - |
| NCBI Gene ID | LOC130998771 |
|---|---|
| GeneID | 130998771 |
| locus_tag | - |
| NCBI Name | LOC130998771 |
| 原始查询 | SmilChr08G004678 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha N-terminal protein methyltransferase 1-like |
| 产物 | alpha N-terminal protein methyltransferase 1-like |
| Arabidopsis | AT5G44450 (AT5G44450)alpha amino-terminal protein methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:834472] identity=57.9; qcov=0.636; evalue=3.67e-47; confidence=medium |
| Rice | Os03g0780900- identity=45.1; qcov=0.645; evalue=3.07e-30; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0006480 (N-terminal protein amino acid methylation); GO:0008168 (methyltransferase activity) |
| KEGG | - |
| Pfam | PF05891 (Methyltransf_PK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998771 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057780161.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057780161.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780161.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780161.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780161.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56269455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr8:56271111 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B140,C65,D6 |
Chr8:56271111 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B140,C65,D6 |
Chr8:56271116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:56271149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr8:56271251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C67 |
Chr8:56271260 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | C65 |
Chr8:56271260 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780161.1PF05891
Methyltransf_PK 69-149 aa
PF05891
Methyltransf_PK 150-214 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780161.1 |
Pfam | PF05891 |
Methyltransf_PK | Family | 69 | 149 | 1.4e-46 | 159.5 | AdoMet dependent proline di-methyltransferase |
XP_057780161.1 |
Pfam | PF05891 |
Methyltransf_PK | Family | 150 | 214 | 1.4e-46 | 159.5 | AdoMet dependent proline di-methyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。