当前解析结果
SmilChr08G004684| 统一新 Gene ID | SmilChr08G004684 |
|---|---|
| 名称 | SmilChr08G004684 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56319868 - 56320677 / + |
| NCBI Gene ID | LOC130998776 |
|---|---|
| GeneID | 130998776 |
| locus_tag | - |
| NCBI Name | LOC130998776 |
| 原始查询 | SmilChr08G004684 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G59218 (AT1G59218)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842234] identity=34.6; qcov=0.375; evalue=1.39e-07; confidence=low |
| Rice | Os11g0654100- identity=30.1; qcov=0.717; evalue=1.05e-09; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998776 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780165.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057780165.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057780165.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780165.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780165.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56320019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B41 |
Chr8:56320020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B41 |
Chr8:56320187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,B79,C25 |
Chr8:56320313 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B13 |
Chr8:56320313 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B13 |
Chr8:56320366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C31,C48,C59,C76 |
Chr8:56320391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B122,B130,B60,C1 |
Chr8:56320598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。