当前解析结果
SmilChr08G004686| 统一新 Gene ID | SmilChr08G004686 |
|---|---|
| 名称 | SmilChr08G004686 |
| 描述 | uncharacterized SmilChr08G004686 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56325676 - 56330306 / + |
| NCBI Gene ID | LOC130998777 |
|---|---|
| GeneID | 130998777 |
| locus_tag | - |
| NCBI Name | LOC130998777 |
| 原始查询 | SmilChr08G004686 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0357300; species=rice; confidence=low |
| 产物 | hit=Os04g0357300; species=rice; confidence=low |
| Arabidopsis | AT5G28780 (AT5G28780)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:832993] identity=38.1; qcov=0.19; evalue=1.67e-45; confidence=weak |
| Rice | Os04g0357300- identity=45; qcov=0.313; evalue=1.55e-118; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998777 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780166.1 |
| 2 | Telomere | 端粒 | 0.60000 | XP_057780166.1 |
| 3 | Chromosome | 染色体 | 0.40000 | XP_057780166.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780166.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780166.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56325748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B61,B72,C45 |
Chr8:56325823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B42,C32,C59 |
Chr8:56325834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,B93,C68 |
Chr8:56325851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B26,B67 |
Chr8:56325865 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B22,B48,C82 |
Chr8:56325907 |
TG |
T |
1bp_deletion | frameshift_variant | 7 | B108,B135,B14,B28,B7,B78,C53 |
Chr8:56325935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,B22 |
Chr8:56326029 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B94 |
Chr8:56326029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr8:56326030 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | A15,B55,B59,B7,C31 |
Chr8:56326030 |
AG |
A |
1bp_deletion | CDS_variant | 5 | A15,B55,B59,B7,C31 |
Chr8:56326042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B55,B59,B7,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780166.1PF14214
Helitron_like_N 326-510 aa
PF05970
PIF1 954-1156 aa
PF21530
Pif1_2B_dom 1251-1296 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780166.1 |
Pfam | PF14214 |
Helitron_like_N | Domain | 326 | 510 | 2.8e-50 | 171.9 | Helitron helicase-like domain at N-terminus |
XP_057780166.1 |
Pfam | PF05970 |
PIF1 | Family | 954 | 1156 | 7.3e-65 | 219.4 | PIF1-like helicase |
XP_057780166.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 1251 | 1296 | 3.2e-17 | 62.7 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。