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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004693

染色体: Chr08 坐标: 56353380-56355440 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004693
名称SmilChr08G004693
描述pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56353380 - 56355440 / -

ID 对照

NCBI Gene IDLOC130999337
GeneID130999337
locus_tag-
NCBI NameLOC130999337
原始查询SmilChr08G004693

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12775%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=36.3; qcov=0.995; evalue=5.93e-125; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.2; qcov=0.882; evalue=2.16e-82; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999337

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780838.1
2 Chloroplast 叶绿体 0.20000 XP_057780838.1
3 Nucleus 细胞核 0.00000 XP_057780838.1
4 Chromosome 染色体 0.00000 XP_057780838.1
5 Centromere 着丝粒 0.00000 XP_057780838.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56353676 G A EMS_canonical_SNV CDS_variant 1 B104
Chr8:56353716 G A EMS_canonical_SNV CDS_variant 4 B80,C48,C81,D10
Chr8:56353718 TA T 1bp_deletion frameshift_variant 1 A10
Chr8:56353718 TA T 1bp_deletion CDS_variant 1 A10
Chr8:56353721 G A EMS_canonical_SNV CDS_variant 1 C68
Chr8:56353766 CG C 1bp_deletion frameshift_variant 21 B104,B108,B112,B12,B130,B137,B33,B42,B43,B60,B65,B95,B98,C32,C62,C68,C76,C78,C84,C87,D4
Chr8:56353772 T TC 1bp_insertion frameshift_variant 22 B104,B108,B110,B112,B12,B130,B137,B33,B42,B43,B60,B65,B95,B98,C32,C62,C68,C76,C78,C84,C87,D4
Chr8:56353799 C T EMS_canonical_SNV CDS_variant 4 B104,C12,C60,D11
Chr8:56353801 G A EMS_canonical_SNV CDS_variant 2 B135,C83
Chr8:56353825 G A EMS_canonical_SNV CDS_variant 2 B72,C46
Chr8:56353861 T TTA 2bp_insertion frameshift_variant 1 B13
Chr8:56353861 T TTA 2bp_insertion CDS_variant 1 B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780838.1
593 aa
N
1
296
593
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR
C
PF13041 PPR_2 67-115 aa PF01535 PPR 71-100 aa PF13812 PPR_3 92-147 aa PF12854 PPR_1 133-164 aa PF13041 PPR_2 137-187 aa PF01535 PPR 141-169 aa PF01535 PPR 180-204 aa PF23276 TPR_24 194-299 aa PF13812 PPR_3 197-253 aa PF13041 PPR_2 209-257 aa PF01535 PPR 212-241 aa PF12854 PPR_1 239-272 aa PF13041 PPR_2 243-292 aa PF01535 PPR 246-276 aa PF13812 PPR_3 267-324 aa PF23276 TPR_24 271-369 aa PF12854 PPR_1 275-307 aa PF13041 PPR_2 279-326 aa PF01535 PPR 281-311 aa PF17177 PPR_long 290-368 aa PF12854 PPR_1 309-342 aa PF13041 PPR_2 313-353 aa PF13812 PPR_3 315-360 aa PF01535 PPR 316-346 aa PF12854 PPR_1 344-369 aa PF13041 PPR_2 348-395 aa PF01535 PPR 351-380 aa PF13041 PPR_2 384-432 aa PF01535 PPR 387-415 aa PF13812 PPR_3 406-463 aa PF12854 PPR_1 415-444 aa PF13041 PPR_2 418-467 aa PF01535 PPR 421-451 aa PF12854 PPR_1 449-480 aa PF01535 PPR 456-486 aa PF13041 PPR_2 456-490 aa PF23276 TPR_24 461-569 aa PF13812 PPR_3 477-531 aa PF12854 PPR_1 484-517 aa PF01535 PPR 492-521 aa PF13041 PPR_2 492-535 aa PF01535 PPR 526-554 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 67 115 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 71 100 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF13812 PPR_3 Repeat 92 147 8.5e-64 212.3 Pentatricopeptide repeat domain
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 133 164 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 137 187 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 141 169 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF01535 PPR Repeat 180 204 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF23276 TPR_24 Repeat 194 299 4.3e-36 124.5 Pentatricopeptide repeat-containing protein
XP_057780838.1 Pfam PF13812 PPR_3 Repeat 197 253 8.5e-64 212.3 Pentatricopeptide repeat domain
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 209 257 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 212 241 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 239 272 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 243 292 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 246 276 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF13812 PPR_3 Repeat 267 324 8.5e-64 212.3 Pentatricopeptide repeat domain
XP_057780838.1 Pfam PF23276 TPR_24 Repeat 271 369 4.3e-36 124.5 Pentatricopeptide repeat-containing protein
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 275 307 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 279 326 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 281 311 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF17177 PPR_long Repeat 290 368 9.7e-29 101.0 Pentacotripeptide-repeat region of PRORP
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 309 342 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 313 353 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF13812 PPR_3 Repeat 315 360 8.5e-64 212.3 Pentatricopeptide repeat domain
XP_057780838.1 Pfam PF01535 PPR Repeat 316 346 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 344 369 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 348 395 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 351 380 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 384 432 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 387 415 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF13812 PPR_3 Repeat 406 463 8.5e-64 212.3 Pentatricopeptide repeat domain
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 415 444 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 418 467 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 421 451 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 449 480 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF01535 PPR Repeat 456 486 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 456 490 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF23276 TPR_24 Repeat 461 569 4.3e-36 124.5 Pentatricopeptide repeat-containing protein
XP_057780838.1 Pfam PF13812 PPR_3 Repeat 477 531 8.5e-64 212.3 Pentatricopeptide repeat domain
XP_057780838.1 Pfam PF12854 PPR_1 Repeat 484 517 2.5e-115 376.6 PPR repeat
XP_057780838.1 Pfam PF01535 PPR Repeat 492 521 2.4e-90 291.4 PPR repeat
XP_057780838.1 Pfam PF13041 PPR_2 Repeat 492 535 1.7e-147 480.1 PPR repeat family
XP_057780838.1 Pfam PF01535 PPR Repeat 526 554 2.4e-90 291.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924855.1
TGCAATTTCAACCCTTTTTTCAGATTCAATCACAACTAATCCGCAAGCGTCGCCCAACACTCACCCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCAATCCATGGTCGCATAAATCGGGTATTATCTCTCCTCCGTTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTAT...

CDS

1 records

下载 CDS FASTA
LOC130999337
ATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCAATCCATGGTCGCATAAATCGGGTATTATCTCTCCTCCGTTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGATTGTTTCAAAAAATGAAGAGTATGCGGCCGGAGCCTTCTGTTCGAATGTATAACAATCTTTTGAGTGTCACTGTAAAGATTGAGCAGTATTCTTT...

Protein

1 records

下载 Protein FASTA
XP_057780838.1
MTSRRAAVFAIDLNPWSHKSGIISPPFSLFSSKAFQPKQPRIDFSCVKELNDAIGLFQKMKSMRPEPSVRMYNNLLSVTVKIEQYSFALYMFDEMLRMGVPVDVYTMTIAVNCCCLSKDIKSGFAVMSIFFKRGYEPNVATFNTLIKGLFLNHKVAEAGKLFNKLLRFRICEPDDVMILAMVNGLCKSGNVLPARDLVRRLERSRSRLDVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYNSMIQGLCDLGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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