Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004698`

染色体: Chr08 坐标: 56417457-56421850 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004698`
名称	SmilChr08G004698
描述	calmodulin-binding protein 60 A-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	56417457 - 56421850 / `+`

ID 对照

NCBI Gene ID	`LOC130999343`
GeneID	`130999343`
locus_tag	`-`
NCBI Name	`LOC130999343`
原始查询	`SmilChr08G004698`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-binding protein 60 A-like
产物	calmodulin-binding protein 60 A-like
Arabidopsis	`AT5G62570` (AT5G62570) Calmodulin binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836377] identity=51.2; qcov=0.734; evalue=5.82e-135; confidence=high
Rice	`Os03g0436300` (Osthi7) - identity=44.2; qcov=0.939; evalue=3.34e-134; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005516 (calmodulin binding); GO:0005634 (nucleus); GO:0043565 (sequence-specific DNA binding); GO:0080142 (regulation of salicylic acid biosynthetic process)
KEGG	-
Pfam	PF07887 (Calmodulin_bind); PF20451 (Calmod_bind_M); PF20452 (Calmod_bind_C)
InterPro	-
eggNOG	-
NR	GeneID:130999343

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780849.1`
2	Chromosome	染色体	0.00000	`XP_057780849.1`
3	Centromere	着丝粒	0.00000	`XP_057780849.1`
4	Chromatin	染色质	0.00000	`XP_057780849.1`
5	Telomere	端粒	0.00000	`XP_057780849.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:56418135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr8:56419310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B49,B60,C68
`Chr8:56419478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr8:56419523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,C1,D1
`Chr8:56419846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B36,C4
`Chr8:56420378`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C30
`Chr8:56420378`	`AC`	`A`	1bp_deletion	CDS_variant	1	C30
`Chr8:56420424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B115,C73
`Chr8:56420704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B61,B76,C13,C60
`Chr8:56421102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr8:56421268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B19
`Chr8:56421269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780849.1

578 aa

289

578

Calmodulin_bind

Calmod_bind_M

Calmod_bind_C

PF07887 Calmodulin_bind 136-282 aa PF20451 Calmod_bind_M 295-360 aa PF20452 Calmod_bind_C 365-423 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780849.1`	Pfam	`PF07887`	Calmodulin_bind	Domain	136	282	1.3e-57	194.8	Calmodulin binding protein-like N-terminal domain
`XP_057780849.1`	Pfam	`PF20451`	Calmod_bind_M	Domain	295	360	1.5e-31	109.5	Calmodulin binding protein central domain
`XP_057780849.1`	Pfam	`PF20452`	Calmod_bind_C	Domain	365	423	3.6e-15	56.6	Calmodulin binding protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924866.1
AATCAAAACAAAAAATTCAAAAAAATCATATATGAACATGAGAACATCCACGCCGTTACACAACAAACCGCCTCACACTTAAATTAAATTCGTAACCAAATATTCAAATTTCGAGTACTTTACTCATTCCATTGCCACCACACCACCACTCGCATAATTCCTTCATTAACCCTTCAAACTCCATCAAAATCACCCCATAATCAGCTAATTACCCATATTTTCTGGCAAATTTCATAATCCCATTTCCGAAATCACTCGTG...

CDS

1 records

下载 CDS FASTA

LOC130999343
ATGTTTGGTCTTTTGGTTCCCCCAACTAGCAAATTTGCTTCTGATTCTCTCATTCAGGCACCCGTGATTATTATATTTGCAGATATACACTCATATATAGTTACACACAGTGCCCAATTTTCATCAATTTTAAAGCTCAGGATGTCTCATAAGCGGCATGGACGGGAAGAAGGCGGTTCCATCGATGAGAAGCGTTTGAGGAAATCTCATTCTTTTAGAAGTGTAGTGCTGGAAGTGATCAACTTGATCCGAATGCAAAA...

Protein

1 records

下载 Protein FASTA

XP_057780849.1
MFGLLVPPTSKFASDSLIQAPVIIIFADIHSYIVTHSAQFSSILKLRMSHKRHGREEGGSIDEKRLRKSHSFRSVVLEVINLIRMQNLMNPLLEPLIRRVVKEEVDSALRKYIVSVKRNSGKDSCSSDSKSLQLQLQLKFLNAISLPVFTGTRIEGDGGTSVEVALVDVHTGEVVSNGAWSSAKVEIVVLEGDFDGDEGDNWSVEEFANNVVREREGKKPLLTGDVILTLNNGTGSVGDISFTDNSSWTRSRKFRLGARL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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