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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004711

染色体: Chr08 坐标: 56531423-56533852 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004711
名称SmilChr08G004711
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56531423 - 56533852 / -

ID 对照

NCBI Gene IDLOC130999315
GeneID130999315
locus_tag-
NCBI NameLOC130999315
原始查询SmilChr08G004711

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=35.1; qcov=0.852; evalue=3.03e-128; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.2; qcov=0.946; evalue=8.11e-122; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999315

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780815.1
2 Chloroplast 叶绿体 0.40000 XP_057780815.1
3 Nucleus 细胞核 0.00000 XP_057780815.1
4 Chromosome 染色体 0.00000 XP_057780815.1
5 Centromere 着丝粒 0.00000 XP_057780815.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56531547 C T EMS_canonical_SNV CDS_variant 5 B2,B23,B51,B7,C63
Chr8:56531667 C T EMS_canonical_SNV CDS_variant 1 B25
Chr8:56531680 C T EMS_canonical_SNV CDS_variant 1 C82
Chr8:56531714 C T EMS_canonical_SNV CDS_variant 5 B122,B2,B51,B7,C63
Chr8:56531792 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:56531809 C T EMS_canonical_SNV CDS_variant 1 B122
Chr8:56531858 G A EMS_canonical_SNV CDS_variant 1 C70
Chr8:56531978 G A EMS_canonical_SNV CDS_variant 2 C30,D11
Chr8:56532002 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:56532023 C T EMS_canonical_SNV CDS_variant 1 C83
Chr8:56532206 G A EMS_canonical_SNV CDS_variant 2 B137,B67
Chr8:56532288 C T EMS_canonical_SNV CDS_variant 3 A10,B53,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780815.1
745 aa
N
1
372
745
PPR_2
PPR_2
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
TPR_24
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 76-125 aa PF13041 PPR_2 146-196 aa PF12854 PPR_1 180-207 aa PF13041 PPR_2 182-233 aa PF01535 PPR 185-211 aa PF12854 PPR_1 217-245 aa PF13812 PPR_3 217-264 aa PF13041 PPR_2 219-268 aa PF23276 TPR_24 222-310 aa PF01535 PPR 223-252 aa PF12854 PPR_1 250-282 aa PF13041 PPR_2 254-291 aa PF01535 PPR 257-283 aa PF12854 PPR_1 288-318 aa PF13041 PPR_2 289-337 aa PF01535 PPR 292-321 aa PF13812 PPR_3 317-371 aa PF12854 PPR_1 322-349 aa PF13041 PPR_2 325-373 aa PF01535 PPR 327-350 aa PF12854 PPR_1 357-379 aa PF01535 PPR 362-384 aa PF12854 PPR_1 391-423 aa PF13812 PPR_3 392-439 aa PF13041 PPR_2 394-442 aa PF01535 PPR 397-424 aa PF17177 PPR_long 412-517 aa PF12854 PPR_1 427-458 aa PF01535 PPR 433-462 aa PF23276 TPR_24 434-525 aa PF13041 PPR_2 435-478 aa PF13812 PPR_3 452-511 aa PF12854 PPR_1 460-491 aa PF01535 PPR 467-497 aa PF13041 PPR_2 472-513 aa PF12854 PPR_1 495-526 aa PF13041 PPR_2 499-548 aa PF01535 PPR 502-531 aa PF23276 TPR_24 522-631 aa PF13812 PPR_3 523-581 aa PF12854 PPR_1 530-561 aa PF13041 PPR_2 534-582 aa PF01535 PPR 537-567 aa PF13812 PPR_3 558-616 aa PF12854 PPR_1 565-596 aa PF13041 PPR_2 569-617 aa PF01535 PPR 572-602 aa PF13812 PPR_3 593-630 aa PF12854 PPR_1 600-631 aa PF13041 PPR_2 605-652 aa PF01535 PPR 607-637 aa PF13812 PPR_3 628-682 aa PF23276 TPR_24 634-724 aa PF12854 PPR_1 635-668 aa PF13041 PPR_2 639-688 aa PF01535 PPR 642-672 aa PF12854 PPR_1 670-702 aa PF13041 PPR_2 674-718 aa PF01535 PPR 677-707 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 76 125 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 146 196 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 180 207 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 182 233 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 185 211 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 217 245 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 217 264 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 219 268 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF23276 TPR_24 Repeat 222 310 9.9e-46 155.7 Pentatricopeptide repeat-containing protein
XP_057780815.1 Pfam PF01535 PPR Repeat 223 252 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 250 282 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 254 291 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 257 283 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 288 318 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 289 337 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 292 321 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 317 371 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 322 349 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 325 373 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 327 350 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 357 379 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF01535 PPR Repeat 362 384 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 391 423 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 392 439 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 394 442 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 397 424 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF17177 PPR_long Repeat 412 517 8.5e-35 120.8 Pentacotripeptide-repeat region of PRORP
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 427 458 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF01535 PPR Repeat 433 462 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF23276 TPR_24 Repeat 434 525 9.9e-46 155.7 Pentatricopeptide repeat-containing protein
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 435 478 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 452 511 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 460 491 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF01535 PPR Repeat 467 497 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 472 513 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 495 526 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 499 548 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 502 531 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF23276 TPR_24 Repeat 522 631 9.9e-46 155.7 Pentatricopeptide repeat-containing protein
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 523 581 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 530 561 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 534 582 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 537 567 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 558 616 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 565 596 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 569 617 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 572 602 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 593 630 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 600 631 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 605 652 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 607 637 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF13812 PPR_3 Repeat 628 682 2.5e-86 284.4 Pentatricopeptide repeat domain
XP_057780815.1 Pfam PF23276 TPR_24 Repeat 634 724 9.9e-46 155.7 Pentatricopeptide repeat-containing protein
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 635 668 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 639 688 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 642 672 5.7e-132 421.9 PPR repeat
XP_057780815.1 Pfam PF12854 PPR_1 Repeat 670 702 4.2e-182 590.2 PPR repeat
XP_057780815.1 Pfam PF13041 PPR_2 Repeat 674 718 8.4e-226 730.9 PPR repeat family
XP_057780815.1 Pfam PF01535 PPR Repeat 677 707 5.7e-132 421.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924832.1
CTCACAAAACCCTAACTCTCCTTCTTCCCCAATTCTTCAGCTTCGAACTTCAGGGCTCACAACCACGCCGCCATGTTTCTGCCTAGAATTTGTTCGAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCCTCTCCACATTATCAATCATTTCTTCTACCCATTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCATAGATTCGATTTTGAATCTATACGTGAGCCCAATGATGCCGT...

CDS

1 records

下载 CDS FASTA
LOC130999315
ATGTTTCTGCCTAGAATTTGTTCGAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCCTCTCCACATTATCAATCATTTCTTCTACCCATTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCATAGATTCGATTTTGAATCTATACGTGAGCCCAATGATGCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTATTACTGTTTTCACGAAATTGCTGAGTAC...

Protein

1 records

下载 Protein FASTA
XP_057780815.1
MFLPRICSNSSSKFSTFSIASPHYQSFLLPIFHFDNASCQMRRHFSAYHRFDFESIREPNDAVALFRDMMRTEPLPSITVFTKLLSTVVKLKQYSAALHLYEKMLQRDAPVNHYTLSIAIDCYCQLKRPDFGFAILGSFFKRGFEPTVVTFNTLVKGLLFVERIPEAAKLLGKLSAYQLCEPDEYTYSTIINGLCKAGDILQAIDLLCSLEKGRGSCKPDVYAYTTVIDSLCKDGKMEEALQLFSTLGDKGISPNVVTYN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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