Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004715`

染色体: Chr08 坐标: 56567862-56569413 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004715`
名称	SmilChr08G004715
描述	pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	56567862 - 56569413 / `+`

ID 对照

NCBI Gene ID	`LOC130998785`
GeneID	`130998785`
locus_tag	`-`
NCBI Name	`LOC130998785`
原始查询	`SmilChr08G004715`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like
产物	pentatricopeptide repeat-containing protein At1g62930%2C chloroplastic-like
Arabidopsis	`AT1G62930` (RPF3) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842594] identity=38.4; qcov=0.932; evalue=4.83e-85; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=34.4; qcov=0.963; evalue=1.39e-71; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130998785

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780175.1`
2	Nucleus	细胞核	0.00000	`XP_057780175.1`
3	Chromosome	染色体	0.00000	`XP_057780175.1`
4	Centromere	着丝粒	0.00000	`XP_057780175.1`
5	Chromatin	染色质	0.00000	`XP_057780175.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:56568262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B135,B6,C1,D8
`Chr8:56568286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B90
`Chr8:56568288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B90
`Chr8:56568301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B90
`Chr8:56568349`	`ACG`	`*`	2bp_deletion	CDS_variant	5	B112,B43,B74,B77,C21
`Chr8:56568366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B25,B73,C23,D10,D11
`Chr8:56568370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B3,B46,B61
`Chr8:56568509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,A4,B37,C85
`Chr8:56568573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B50,C83
`Chr8:56568588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B47,B64,B78,C16
`Chr8:56568592`	`AT`	`A`	1bp_deletion	frameshift_variant	81	A1,A19,A20,A22,A23,A3,A7,A8,B1,B100,B102,B105,B107,B11,B112,B120,B124,B128,B134,B135,B25,B3,B39,B43,B45,B50,B51,B55,B56,B60,B62,B63,B66,B70,B71,B72,B74,B76,B77,B79,B82,B88,B90,B91,B92,B93,B94,B96,B98,C10,C11,C14,C16,C17,C18,C26,C28,C29,C3,C30,C38,C39,C40,C41,C44,C49,C5,C56,C58,C59,C61,C7,C74,C75,C77,C78,C83,C84,D10,D3,D5
`Chr8:56568597`	`G`	`GA`	1bp_insertion	frameshift_variant	81	A1,A19,A20,A22,A23,A3,A7,A8,B1,B100,B102,B105,B107,B11,B112,B120,B124,B128,B134,B135,B25,B3,B43,B45,B50,B51,B55,B56,B60,B62,B63,B66,B70,B71,B72,B74,B76,B77,B79,B82,B86,B88,B90,B91,B92,B93,B94,B96,B98,C10,C11,C14,C16,C17,C18,C26,C28,C29,C3,C30,C38,C39,C40,C41,C44,C49,C5,C56,C58,C61,C64,C7,C74,C75,C77,C78,C83,C84,D10,D3,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780175.1

380 aa

190

380

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_3

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF13812 PPR_3 22-75 aa PF12854 PPR_1 25-57 aa PF13041 PPR_2 29-78 aa PF01535 PPR 32-60 aa PF12854 PPR_1 62-93 aa PF13041 PPR_2 64-112 aa PF01535 PPR 68-95 aa PF13812 PPR_3 91-146 aa PF12854 PPR_1 97-124 aa PF13041 PPR_2 99-148 aa PF01535 PPR 102-132 aa PF12854 PPR_1 131-160 aa PF01535 PPR 137-166 aa PF13812 PPR_3 157-214 aa PF23276 TPR_24 162-265 aa PF12854 PPR_1 166-198 aa PF13041 PPR_2 169-217 aa PF01535 PPR 172-201 aa PF13812 PPR_3 193-249 aa PF12854 PPR_1 201-233 aa PF01535 PPR 208-237 aa PF13041 PPR_2 208-253 aa PF12854 PPR_1 235-266 aa PF13041 PPR_2 239-287 aa PF01535 PPR 242-272 aa PF23276 TPR_24 262-356 aa PF13812 PPR_3 263-317 aa PF12854 PPR_1 270-303 aa PF13041 PPR_2 274-323 aa PF01535 PPR 277-307 aa PF12854 PPR_1 305-337 aa PF13041 PPR_2 309-354 aa PF01535 PPR 312-342 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780175.1`	Pfam	`PF13812`	PPR_3	Repeat	22	75	9.3e-54	180.1	Pentatricopeptide repeat domain
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	25	57	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	29	78	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	32	60	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	62	93	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	64	112	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	68	95	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF13812`	PPR_3	Repeat	91	146	9.3e-54	180.1	Pentatricopeptide repeat domain
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	97	124	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	99	148	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	102	132	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	131	160	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	137	166	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF13812`	PPR_3	Repeat	157	214	9.3e-54	180.1	Pentatricopeptide repeat domain
`XP_057780175.1`	Pfam	`PF23276`	TPR_24	Repeat	162	265	7.8e-24	84.8	Pentatricopeptide repeat-containing protein
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	166	198	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	169	217	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	172	201	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF13812`	PPR_3	Repeat	193	249	9.3e-54	180.1	Pentatricopeptide repeat domain
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	201	233	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	208	237	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	208	253	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	235	266	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	239	287	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	242	272	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF23276`	TPR_24	Repeat	262	356	7.8e-24	84.8	Pentatricopeptide repeat-containing protein
`XP_057780175.1`	Pfam	`PF13812`	PPR_3	Repeat	263	317	9.3e-54	180.1	Pentatricopeptide repeat domain
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	270	303	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	274	323	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	277	307	1.6e-69	226.2	PPR repeat
`XP_057780175.1`	Pfam	`PF12854`	PPR_1	Repeat	305	337	2.4e-101	331.8	PPR repeat
`XP_057780175.1`	Pfam	`PF13041`	PPR_2	Repeat	309	354	1.6e-122	400.2	PPR repeat family
`XP_057780175.1`	Pfam	`PF01535`	PPR	Repeat	312	342	1.6e-69	226.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924192.1
ATGGGGTTGAGCTTAGGAAGAAATGGAAGGAGTTTGGCCGAAGCTCCATGCTGTCGAAGACGCATCAGTGATAGGGGGATTTCACCGGATGTCGTGACATATAATTCAATAATTGAGGGCTTATGCAAGATGAGAAGAGTGGATGAGGCTCAAGACATTTTAAGGAAGATGATAGCTAATAAGGTCTGCCCAAATGTGTGGACGTATAATATCTTTGTGGATGCTTGGTGCAAAGATGGAAAAGTGGAAGAGGCCGAGTA...

CDS

1 records

下载 CDS FASTA

LOC130998785
ATGGGGTTGAGCTTAGGAAGAAATGGAAGGAGTTTGGCCGAAGCTCCATGCTGTCGAAGACGCATCAGTGATAGGGGGATTTCACCGGATGTCGTGACATATAATTCAATAATTGAGGGCTTATGCAAGATGAGAAGAGTGGATGAGGCTCAAGACATTTTAAGGAAGATGATAGCTAATAAGGTCTGCCCAAATGTGTGGACGTATAATATCTTTGTGGATGCTTGGTGCAAAGATGGAAAAGTGGAAGAGGCCGAGTA...

Protein

1 records

下载 Protein FASTA

XP_057780175.1
MGLSLGRNGRSLAEAPCCRRRISDRGISPDVVTYNSIIEGLCKMRRVDEAQDILRKMIANKVCPNVWTYNIFVDAWCKDGKVEEAEYTLVKMKEIDVQPNIVTYTALINGYCLQGKMEEAGRIFQLAVNSGIKPDIISYCSLMNGYCKIGRVDEVSRLFTKIGTEGLERNVVCYGTMLEALFREGRCEDGLNLFKEMQALGLSPDVKTYNILLDGLCSAHRITEAFSILHTMEGKGIVPDIVTFNILIEGLCNDNKVREA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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