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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004717

染色体: Chr08 坐标: 56590274-56593703 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004717
名称SmilChr08G004717
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56590274 - 56593703 / +

ID 对照

NCBI Gene IDLOC130999329
GeneID130999329
locus_tag-
NCBI NameLOC130999329
原始查询SmilChr08G004717

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=37.5; qcov=0.889; evalue=1.38e-139; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=32.9; qcov=0.887; evalue=1.56e-99; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999329

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780827.1
2 Nucleus 细胞核 0.00000 XP_057780827.1
3 Chromosome 染色体 0.00000 XP_057780827.1
4 Centromere 着丝粒 0.00000 XP_057780827.1
5 Chromatin 染色质 0.00000 XP_057780827.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56590369 TG T 1bp_deletion frameshift_variant 1 B83
Chr8:56590369 TG T 1bp_deletion CDS_variant 1 B83
Chr8:56590595 C T EMS_canonical_SNV CDS_variant 2 C14,C43
Chr8:56590596 G A EMS_canonical_SNV CDS_variant 2 B101,B78
Chr8:56590625 G A EMS_canonical_SNV CDS_variant 3 B121,B57,C42
Chr8:56590626 G A EMS_canonical_SNV CDS_variant 3 B121,B57,C42
Chr8:56590632 CT C 1bp_deletion frameshift_variant 1 C23
Chr8:56590632 CT C 1bp_deletion CDS_variant 1 C23
Chr8:56590664 G A EMS_canonical_SNV CDS_variant 1 B78
Chr8:56590735 C T EMS_canonical_SNV CDS_variant 2 B31,B7
Chr8:56590787 G A EMS_canonical_SNV CDS_variant 1 D10
Chr8:56590851 G A EMS_canonical_SNV CDS_variant 2 B104,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780827.1
630 aa
N
1
315
630
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR_long
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
TPR_24
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 101-150 aa PF01535 PPR 106-132 aa PF13041 PPR_2 171-221 aa PF01535 PPR 174-198 aa PF12854 PPR_1 205-232 aa PF13041 PPR_2 207-258 aa PF01535 PPR 210-236 aa PF12854 PPR_1 241-270 aa PF13812 PPR_3 241-289 aa PF13041 PPR_2 244-293 aa PF23276 TPR_24 246-337 aa PF17177 PPR_long 246-358 aa PF01535 PPR 247-277 aa PF13812 PPR_3 269-324 aa PF12854 PPR_1 275-307 aa PF13041 PPR_2 281-328 aa PF01535 PPR 282-310 aa PF13812 PPR_3 303-361 aa PF12854 PPR_1 312-343 aa PF01535 PPR 318-345 aa PF13812 PPR_3 338-396 aa PF12854 PPR_1 347-374 aa PF13041 PPR_2 349-398 aa PF01535 PPR 352-382 aa PF13812 PPR_3 372-430 aa PF12854 PPR_1 381-410 aa PF13041 PPR_2 384-431 aa PF01535 PPR 387-416 aa PF13812 PPR_3 407-463 aa PF23276 TPR_24 412-516 aa PF12854 PPR_1 416-448 aa PF13041 PPR_2 419-467 aa PF01535 PPR 422-452 aa PF13812 PPR_3 443-499 aa PF12854 PPR_1 451-483 aa PF23276 TPR_24 457-539 aa PF01535 PPR 458-487 aa PF13041 PPR_2 458-503 aa PF12854 PPR_1 485-516 aa PF13041 PPR_2 489-538 aa PF01535 PPR 492-522 aa PF13812 PPR_3 513-567 aa PF12854 PPR_1 520-553 aa PF13041 PPR_2 524-573 aa PF01535 PPR 527-557 aa PF12854 PPR_1 555-587 aa PF13041 PPR_2 559-604 aa PF01535 PPR 562-592 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 101 150 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 106 132 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 171 221 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 174 198 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 205 232 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 207 258 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 210 236 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 241 270 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 241 289 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 244 293 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF23276 TPR_24 Repeat 246 337 2.9e-31 108.8 Pentatricopeptide repeat-containing protein
XP_057780827.1 Pfam PF17177 PPR_long Repeat 246 358 2.1e-23 83.6 Pentacotripeptide-repeat region of PRORP
XP_057780827.1 Pfam PF01535 PPR Repeat 247 277 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 269 324 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 275 307 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 281 328 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 282 310 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 303 361 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 312 343 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF01535 PPR Repeat 318 345 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 338 396 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 347 374 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 349 398 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 352 382 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 372 430 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 381 410 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 384 431 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 387 416 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 407 463 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF23276 TPR_24 Repeat 412 516 2.9e-31 108.8 Pentatricopeptide repeat-containing protein
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 416 448 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 419 467 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 422 452 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 443 499 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 451 483 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF23276 TPR_24 Repeat 457 539 2.9e-31 108.8 Pentatricopeptide repeat-containing protein
XP_057780827.1 Pfam PF01535 PPR Repeat 458 487 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 458 503 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 485 516 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 489 538 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 492 522 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF13812 PPR_3 Repeat 513 567 1.1e-65 218.2 Pentatricopeptide repeat domain
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 520 553 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 524 573 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 527 557 1.1e-94 305.0 PPR repeat
XP_057780827.1 Pfam PF12854 PPR_1 Repeat 555 587 7.3e-133 432.7 PPR repeat
XP_057780827.1 Pfam PF13041 PPR_2 Repeat 559 604 4.8e-168 546.0 PPR repeat family
XP_057780827.1 Pfam PF01535 PPR Repeat 562 592 1.1e-94 305.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924844.1
CTCCATCTTCAACAGCGACCTTCCCCAATTTATTTCCAATTCTTCTTTCAATTCATTCACTATGAGAATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTTCAATTCTTCTTTCAATTCATCCACTCTCCCCATTGCTTCTCTACACTCGTTTCTTACCAAACCCAGATTCAATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTCAATCTTGATAATCTCACCCACCAAA...

CDS

1 records

下载 CDS FASTA
LOC130999329
ATGAGAATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTTCAATTCTTCTTTCAATTCATCCACTCTCCCCATTGCTTCTCTACACTCGTTTCTTACCAAACCCAGATTCAATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTCAATCTTGATAATCTCACCCACCAAATTAGATCCTTCTCCTCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAATGATGC...

Protein

1 records

下载 Protein FASTA
XP_057780827.1
MRMRRNHAAMILGRIIFNSSFNSSTLPIASLHSFLTKPRFNFDNASCQMRHFSAYPRFNLDNLTHQIRSFSSYPRFDFGSIREPNDAVALFRDMMRTEPLPSVKLFSRLLSAVVKLKQYSAALHLFDEMLQRDAPVNHYTLSIAIDCYCRLKRPDFGFAILGIFFKRGYEPTVVTFNILVKGLLFVGRIPEAAKLLGKLSAYQLCDPDEYTYNTIIHGLCKAGDILQAIGLLCSLEKGKGNCKPDVYSYNIVIDGLCKNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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