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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004719

染色体: Chr08 坐标: 56624603-56626723 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004719
名称SmilChr08G004719
描述pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56624603 - 56626723 / +

ID 对照

NCBI Gene IDLOC130999318
GeneID130999318
locus_tag-
NCBI NameLOC130999318
原始查询SmilChr08G004719

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62670%2C mitochondrial-like
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=33.5; qcov=0.926; evalue=1.15e-122; confidence=low
RiceOs08g0107800
-
identity=32.3; qcov=0.878; evalue=1.34e-101; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999318

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780817.1
2 Chloroplast 叶绿体 0.20000 XP_057780817.1
3 Nucleus 细胞核 0.00000 XP_057780817.1
4 Chromosome 染色体 0.00000 XP_057780817.1
5 Centromere 着丝粒 0.00000 XP_057780817.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56624739 G A EMS_canonical_SNV CDS_variant 4 A13,B19,B37,B85
Chr8:56624752 C T EMS_canonical_SNV CDS_variant 5 A22,B1,B104,B119,C8
Chr8:56624869 C T EMS_canonical_SNV CDS_variant 4 B30,C18,C7,D5
Chr8:56624883 G GAT 2bp_insertion frameshift_variant 2 C3,C74
Chr8:56624883 G GAT 2bp_insertion CDS_variant 2 C3,C74
Chr8:56624909 C T EMS_canonical_SNV CDS_variant 1 C14
Chr8:56624910 G A EMS_canonical_SNV CDS_variant 1 B78
Chr8:56624925 G A EMS_canonical_SNV CDS_variant 1 A22
Chr8:56624978 G A EMS_canonical_SNV CDS_variant 1 B78
Chr8:56624983 C T EMS_canonical_SNV CDS_variant 2 B73,D7
Chr8:56624996 G A EMS_canonical_SNV CDS_variant 1 C61
Chr8:56625029 C T EMS_canonical_SNV CDS_variant 1 C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780817.1
646 aa
N
1
323
646
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
TPR_24
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 83-132 aa PF01535 PPR 88-114 aa PF13041 PPR_2 153-203 aa PF01535 PPR 156-180 aa PF12854 PPR_1 187-214 aa PF13041 PPR_2 189-240 aa PF01535 PPR 192-218 aa PF17177 PPR_long 203-359 aa PF12854 PPR_1 223-252 aa PF13812 PPR_3 223-271 aa PF23276 TPR_24 226-321 aa PF01535 PPR 229-252 aa PF13041 PPR_2 233-275 aa PF12854 PPR_1 258-290 aa PF13041 PPR_2 261-309 aa PF01535 PPR 264-292 aa PF13812 PPR_3 285-322 aa PF12854 PPR_1 294-322 aa PF13041 PPR_2 296-345 aa PF01535 PPR 299-329 aa PF13812 PPR_3 319-377 aa PF12854 PPR_1 328-357 aa PF13041 PPR_2 331-379 aa PF01535 PPR 334-363 aa PF12854 PPR_1 363-395 aa PF13041 PPR_2 366-414 aa PF01535 PPR 369-399 aa PF17177 PPR_long 375-529 aa PF13812 PPR_3 390-446 aa PF23276 TPR_24 391-498 aa PF12854 PPR_1 398-430 aa PF13041 PPR_2 402-450 aa PF01535 PPR 405-434 aa PF12854 PPR_1 432-463 aa PF13041 PPR_2 436-485 aa PF01535 PPR 439-469 aa PF13812 PPR_3 460-519 aa PF12854 PPR_1 467-498 aa PF13041 PPR_2 473-520 aa PF01535 PPR 474-504 aa PF12854 PPR_1 502-533 aa PF01535 PPR 509-539 aa PF23276 TPR_24 509-600 aa PF13041 PPR_2 513-554 aa PF13812 PPR_3 530-584 aa PF12854 PPR_1 537-570 aa PF13041 PPR_2 541-590 aa PF01535 PPR 544-574 aa PF12854 PPR_1 572-605 aa PF13041 PPR_2 576-619 aa PF01535 PPR 579-609 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 83 132 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 88 114 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 153 203 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 156 180 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 187 214 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 189 240 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 192 218 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF17177 PPR_long Repeat 203 359 1e-25 91.1 Pentacotripeptide-repeat region of PRORP
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 223 252 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13812 PPR_3 Repeat 223 271 5.9e-66 219.2 Pentatricopeptide repeat domain
XP_057780817.1 Pfam PF23276 TPR_24 Repeat 226 321 4.7e-37 127.6 Pentatricopeptide repeat-containing protein
XP_057780817.1 Pfam PF01535 PPR Repeat 229 252 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 233 275 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 258 290 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 261 309 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 264 292 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF13812 PPR_3 Repeat 285 322 5.9e-66 219.2 Pentatricopeptide repeat domain
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 294 322 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 296 345 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 299 329 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF13812 PPR_3 Repeat 319 377 5.9e-66 219.2 Pentatricopeptide repeat domain
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 328 357 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 331 379 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 334 363 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 363 395 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 366 414 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 369 399 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF17177 PPR_long Repeat 375 529 1e-25 91.1 Pentacotripeptide-repeat region of PRORP
XP_057780817.1 Pfam PF13812 PPR_3 Repeat 390 446 5.9e-66 219.2 Pentatricopeptide repeat domain
XP_057780817.1 Pfam PF23276 TPR_24 Repeat 391 498 4.7e-37 127.6 Pentatricopeptide repeat-containing protein
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 398 430 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 402 450 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 405 434 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 432 463 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 436 485 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 439 469 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF13812 PPR_3 Repeat 460 519 5.9e-66 219.2 Pentatricopeptide repeat domain
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 467 498 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 473 520 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 474 504 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 502 533 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF01535 PPR Repeat 509 539 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF23276 TPR_24 Repeat 509 600 4.7e-37 127.6 Pentatricopeptide repeat-containing protein
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 513 554 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF13812 PPR_3 Repeat 530 584 5.9e-66 219.2 Pentatricopeptide repeat domain
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 537 570 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 541 590 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 544 574 7.5e-107 343.1 PPR repeat
XP_057780817.1 Pfam PF12854 PPR_1 Repeat 572 605 8.3e-144 467.7 PPR repeat
XP_057780817.1 Pfam PF13041 PPR_2 Repeat 576 619 1.1e-189 615.2 PPR repeat family
XP_057780817.1 Pfam PF01535 PPR Repeat 579 609 7.5e-107 343.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924834.1
AAGGCAAAGAAAACCTTTATTCTTCACAAAACCCTATCTCTCCATCTTCAACAGCGACCTTCCCCAATTTATTTCCAATTCTTCTTTCAATTCATTCACTATGAGAATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCTTTCAATTCATCCACTCTCCCCATTGCTTCTCTACACTCGTTTCTTCTCAAACCCAGATTCAATTTTGATAATCTCACCCACCAAATTAGATCCTTCTCCT...

CDS

1 records

下载 CDS FASTA
LOC130999318
ATGAGAATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCTTTCAATTCATCCACTCTCCCCATTGCTTCTCTACACTCGTTTCTTCTCAAACCCAGATTCAATTTTGATAATCTCACCCACCAAATTAGATCCTTCTCCTCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAATGATGCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTAAGCT...

Protein

1 records

下载 Protein FASTA
XP_057780817.1
MRMRRNHAAMILGRIISNSSFNSSTLPIASLHSFLLKPRFNFDNLTHQIRSFSSYPRFDFGSIREPNDAVALFRDMMRTEPLPSVKLFSRLLSAVVKLKQYSAALHLFDEMLQRDAPVNHYTLSIAIDCYCRLKRPDFGFAILGIFFKRGYEPTVVTFNILVKGLLFVGRIPEAAKLLGKLSAYQLCEPDEYTYNTIIHGLCKAGDILQAINLLCSLEKGKGNCKPDAYSYSIVIDGLCKNGKVDEALQLFSTLGDKEIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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