Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004724`

染色体: Chr08 坐标: 56640689-56643088 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004724`
名称	SmilChr08G004724
描述	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	56640689 - 56643088 / `+`

ID 对照

NCBI Gene ID	`LOC130999331`
GeneID	`130999331`
locus_tag	`-`
NCBI Name	`LOC130999331`
原始查询	`SmilChr08G004724`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic
产物	putative pentatricopeptide repeat-containing protein At5g59200%2C chloroplastic
Arabidopsis	`AT5G59200` (OTP80) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836038] identity=51.5; qcov=0.859; evalue=0; confidence=high
Rice	`Os07g0113500` (OJ1513_F02.122) - identity=42; qcov=0.954; evalue=0; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:130999331

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780830.1`
2	Nucleus	细胞核	0.00000	`XP_057780830.1`
3	Chromosome	染色体	0.00000	`XP_057780830.1`
4	Centromere	着丝粒	0.00000	`XP_057780830.1`
5	Chromatin	染色质	0.00000	`XP_057780830.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:56640790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:56640831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,C35,D5
`Chr8:56640922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C23
`Chr8:56640942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B104,B133,C34,C65
`Chr8:56640981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B33,B49,B60,C32,C68
`Chr8:56641010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B78,C65,C85
`Chr8:56641036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C23
`Chr8:56641044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B78,C85
`Chr8:56641098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,C35,D10,D5
`Chr8:56641293`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B76
`Chr8:56641293`	`TG`	`T`	1bp_deletion	CDS_variant	1	B76
`Chr8:56641300`	`C`	`T`	EMS_canonical_SNV	stop_gained	17	B10,B112,B122,B29,B35,B41,B53,B62,B9,B91,C1,C25,C3,C34,C41,C53,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780830.1

629 aa

314

629

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

E_motif

DYW_deaminase

PF13812 PPR_3 84-133 aa PF01535 PPR 89-117 aa PF01535 PPR 163-187 aa PF13041 PPR_2 218-266 aa PF01535 PPR 220-250 aa PF01535 PPR 293-319 aa PF13812 PPR_3 319-365 aa PF12854 PPR_1 320-347 aa PF13041 PPR_2 320-366 aa PF01535 PPR 321-351 aa PF01535 PPR 357-383 aa PF01535 PPR 393-416 aa PF20431 E_motif 438-501 aa PF14432 DYW_deaminase 537-629 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780830.1`	Pfam	`PF13812`	PPR_3	Repeat	84	133	9.2e-21	74.4	Pentatricopeptide repeat domain
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	89	117	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	163	187	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF13041`	PPR_2	Repeat	218	266	2.5e-46	156.3	PPR repeat family
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	220	250	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	293	319	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF13812`	PPR_3	Repeat	319	365	9.2e-21	74.4	Pentatricopeptide repeat domain
`XP_057780830.1`	Pfam	`PF12854`	PPR_1	Repeat	320	347	6.7e-25	87.2	PPR repeat
`XP_057780830.1`	Pfam	`PF13041`	PPR_2	Repeat	320	366	2.5e-46	156.3	PPR repeat family
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	321	351	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	357	383	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF01535`	PPR	Repeat	393	416	5.2e-44	146.2	PPR repeat
`XP_057780830.1`	Pfam	`PF20431`	E_motif	Repeat	438	501	6e-11	43.2	E motif
`XP_057780830.1`	Pfam	`PF14432`	DYW_deaminase	Domain	537	629	9.2e-40	135.1	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924847.1
TATAAAAATGCATTTTCTTATTTATTACCACAAAATATAAAAATTGACCCAAACAAAATCCGCCTAAAAGGATTCAACGCTCAATGAGTTCCTTAACACCTCTGCCTCATCTCCCGCCAAATTCAAACTTCCCCAATTCCAACTCAAATCGCCGCAAGAACACGATTTTCCACCTGCAAAATTGCAGAAATCTCGATCAAATCGCTCCAATCCATACTAACATCATAAAAAACGGCCAAGAACACGACCATTTCATCGCG...

CDS

1 records

下载 CDS FASTA

LOC130999331
ATGAGTTCCTTAACACCTCTGCCTCATCTCCCGCCAAATTCAAACTTCCCCAATTCCAACTCAAATCGCCGCAAGAACACGATTTTCCACCTGCAAAATTGCAGAAATCTCGATCAAATCGCTCCAATCCATACTAACATCATAAAAAACGGCCAAGAACACGACCATTTCATCGCGTTCGAGCTTCTCCGAGCTTGCTCCAGATTCGACGCCATTGATTATGCAATCAAGGTTTTCCGTCGAACAAGGCAGCCGAATGT...

Protein

1 records

下载 Protein FASTA

XP_057780830.1
MSSLTPLPHLPPNSNFPNSNSNRRKNTIFHLQNCRNLDQIAPIHTNIIKNGQEHDHFIAFELLRACSRFDAIDYAIKVFRRTRQPNVYVYTALIDALVAAGSHHRAITSYVQMIENSVYPDNFVINSVLKACGLELDLGIGKQIHCHGLKLGLCSNRQVKLKLMELYGKCAKFDEMQKLFDEMPERDVVAMTVMISSYLEHRLVERACVAFDLVEVKDAVCWTTMIDGLVRNEEMSKALECFRRMQREGVRANEVTAVCM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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