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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004733

染色体: Chr08 坐标: 56721245-56725439 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004733
名称SmilChr08G004733
描述receptor kinase-like protein Xa21
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56721245 - 56725439 / -

ID 对照

NCBI Gene IDLOC130999303
GeneID130999303
locus_tag-
NCBI NameLOC130999303
原始查询SmilChr08G004733

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor kinase-like protein Xa21
产物receptor kinase-like protein Xa21
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=33.1; qcov=1.08; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=38.8; qcov=1.01; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:130999303

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057780798.1
2 Nucleus 细胞核 0.00000 XP_057780798.1
3 Chromosome 染色体 0.00000 XP_057780798.1
4 Centromere 着丝粒 0.00000 XP_057780798.1
5 Chromatin 染色质 0.00000 XP_057780798.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56721727 GA G 1bp_deletion frameshift_variant 10 A7,B104,B117,B131,B17,B19,B32,B33,B60,C68
Chr8:56721764 C CAA 2bp_insertion frameshift_variant 10 B127,B37,B73,B79,B99,C11,C23,C48,C73,C87
Chr8:56721777 G A EMS_canonical_SNV CDS_variant 3 B40,C55,C67
Chr8:56721795 G A EMS_canonical_SNV CDS_variant 1 C55
Chr8:56721802 G A EMS_canonical_SNV CDS_variant 1 B32
Chr8:56721816 C T EMS_canonical_SNV CDS_variant 3 A13,B118,C45
Chr8:56721828 G A EMS_canonical_SNV CDS_variant 5 A10,A21,A24,B115,C61
Chr8:56721842 G A EMS_canonical_SNV stop_gained 3 B12,B13,B55
Chr8:56721842 G A EMS_canonical_SNV CDS_variant 3 B12,B13,B55
Chr8:56721854 C T EMS_canonical_SNV CDS_variant 4 B136,B48,B91,B95
Chr8:56721863 C T EMS_canonical_SNV CDS_variant 2 B58,B69
Chr8:56721866 C T EMS_canonical_SNV CDS_variant 2 B20,C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780798.1
1185 aa
N
1
592
1185
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 435-495 aa PF00560 LRR_1 436-458 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 537-559 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 658-679 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1041 aa PF07714 PK_Tyr_Ser-Thr 876-1031 aa
XP_057780799.1
1185 aa
N
1
592
1185
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 435-495 aa PF00560 LRR_1 436-458 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 537-559 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 658-679 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1041 aa PF07714 PK_Tyr_Ser-Thr 876-1031 aa
XP_057780800.1
1185 aa
N
1
592
1185
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 435-495 aa PF00560 LRR_1 436-458 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 537-559 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 658-679 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1041 aa PF07714 PK_Tyr_Ser-Thr 876-1031 aa
XP_057780801.1
1154 aa
N
1
577
1154
LRRNT_2
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF13855 LRR_8 243-301 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 435-495 aa PF00560 LRR_1 436-458 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 537-559 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 658-679 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1142 aa PF07714 PK_Tyr_Ser-Thr 876-1145 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780798.1 Pfam PF08263 LRRNT_2 Family 33 68 6.4e-06 27.1 Leucine rich repeat N-terminal domain
XP_057780798.1 Pfam PF13855 LRR_8 Repeat 144 204 1.4e-52 176.0 Leucine rich repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 145 167 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 169 191 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 267 288 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 290 312 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 364 385 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF13855 LRR_8 Repeat 435 495 1.4e-52 176.0 Leucine rich repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 436 458 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 512 534 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 537 559 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 586 607 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 658 679 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 705 727 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00560 LRR_1 Repeat 729 750 2.5e-58 182.1 Leucine Rich Repeat
XP_057780798.1 Pfam PF00069 Pkinase Domain 873 1041 3.9e-34 119.0 Protein kinase domain
XP_057780798.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 876 1031 1.8e-33 116.7 Protein tyrosine and serine/threonine kinase
XP_057780799.1 Pfam PF08263 LRRNT_2 Family 33 68 6.4e-06 27.1 Leucine rich repeat N-terminal domain
XP_057780799.1 Pfam PF13855 LRR_8 Repeat 144 204 1.4e-52 176.0 Leucine rich repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 145 167 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 169 191 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 267 288 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 290 312 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 364 385 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF13855 LRR_8 Repeat 435 495 1.4e-52 176.0 Leucine rich repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 436 458 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 512 534 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 537 559 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 586 607 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 658 679 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 705 727 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00560 LRR_1 Repeat 729 750 2.5e-58 182.1 Leucine Rich Repeat
XP_057780799.1 Pfam PF00069 Pkinase Domain 873 1041 3.9e-34 119.0 Protein kinase domain
XP_057780799.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 876 1031 1.8e-33 116.7 Protein tyrosine and serine/threonine kinase
XP_057780800.1 Pfam PF08263 LRRNT_2 Family 33 68 6.4e-06 27.1 Leucine rich repeat N-terminal domain
XP_057780800.1 Pfam PF13855 LRR_8 Repeat 144 204 1.4e-52 176.0 Leucine rich repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 145 167 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 169 191 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 267 288 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 290 312 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 364 385 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF13855 LRR_8 Repeat 435 495 1.4e-52 176.0 Leucine rich repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 436 458 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 512 534 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 537 559 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 586 607 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 658 679 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 705 727 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00560 LRR_1 Repeat 729 750 2.5e-58 182.1 Leucine Rich Repeat
XP_057780800.1 Pfam PF00069 Pkinase Domain 873 1041 3.9e-34 119.0 Protein kinase domain
XP_057780800.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 876 1031 1.8e-33 116.7 Protein tyrosine and serine/threonine kinase
XP_057780801.1 Pfam PF08263 LRRNT_2 Family 33 68 6e-06 27.1 Leucine rich repeat N-terminal domain
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 145 167 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 169 191 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF13855 LRR_8 Repeat 243 301 1e-52 176.4 Leucine rich repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 267 288 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 290 312 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 364 385 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF13855 LRR_8 Repeat 435 495 1e-52 176.4 Leucine rich repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 436 458 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 512 534 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 537 559 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 586 607 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 658 679 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 705 727 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00560 LRR_1 Repeat 729 750 1.1e-58 183.2 Leucine Rich Repeat
XP_057780801.1 Pfam PF00069 Pkinase Domain 873 1142 4.6e-39 135.1 Protein kinase domain
XP_057780801.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 876 1145 6.3e-39 134.5 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057924818.1
CACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCGAAGAGTTTCTGCGTTGAATCTCTCCAACATG...
XM_057924815.1
CACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCGAAGAGTTTCTGCGTTGAATCTCTCCAACATG...

CDS

4 records

下载 CDS FASTA
LOC130999303
ATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCGAAGAGTTTCTGCGTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...
LOC130999303
ATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCGAAGAGTTTCTGCGTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

4 records

下载 Protein FASTA
XP_057780798.1
MEKKLYCILQYAFLITITFQMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSLRHRRVSALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFYGDLPHQLSLLHRLKFISFRLNHFTGDIPPMLGQLPKLEHLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLAVQFNHLSGAIPSAIFNISTLVAIALTNNELSGSLQTDMCSNLPFLTVLGLSFNQLSGAIPTN...
XP_057780799.1
MEKKLYCILQYAFLITITFQMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSLRHRRVSALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFYGDLPHQLSLLHRLKFISFRLNHFTGDIPPMLGQLPKLEHLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLAVQFNHLSGAIPSAIFNISTLVAIALTNNELSGSLQTDMCSNLPFLTVLGLSFNQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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