当前解析结果
SmilChr08G004734| 统一新 Gene ID | SmilChr08G004734 |
|---|---|
| 名称 | SmilChr08G004734 |
| 描述 | LRR receptor-like serine/threonine-protein kinase RGI5 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56738063 - 56739460 / - |
| NCBI Gene ID | LOC130998792 |
|---|---|
| GeneID | 130998792 |
| locus_tag | - |
| NCBI Name | LOC130998792 |
| 原始查询 | SmilChr08G004734 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase RGI5 |
| 产物 | LRR receptor-like serine/threonine-protein kinase RGI5 |
| Arabidopsis | AT5G63930 (AT5G63930)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836514] identity=38.3; qcov=0.901; evalue=1.15e-42; confidence=medium |
| Rice | Os01g0170300- identity=37.1; qcov=0.938; evalue=6.12e-44; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998792 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780181.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057780181.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057780181.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780181.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780181.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56738078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C46 |
Chr8:56738122 |
T |
TA |
1bp_insertion | frameshift_variant | 4 | B119,B20,B5,B8 |
Chr8:56738122 |
T |
TA |
1bp_insertion | CDS_variant | 4 | B119,B20,B5,B8 |
Chr8:56738138 |
AT |
A |
1bp_deletion | frameshift_variant | 36 | A10,A23,B114,B115,B119,B12,B123,B125,B130,B133,B29,B3,B30,B36,B46,B5,B51,B61,B67,B68,B70,B8,B86,B93,B95,C26,C27,C30,C33,C45,C51,C54,C55,C56,C84,D6 |
Chr8:56738209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:56738214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C82,D4 |
Chr8:56738220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C14 |
Chr8:56738224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B54,C30,C5 |
Chr8:56738228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C40 |
Chr8:56738284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr8:56738314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr8:56738321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780181.1PF00560
LRR_1 7-29 aa
PF00560
LRR_1 32-53 aa
PF00560
LRR_1 55-77 aa
PF00560
LRR_1 129-150 aa
PF13855
LRR_8 129-187 aa
PF00560
LRR_1 258-279 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780181.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 7 | 29 | 2.1e-24 | 81.0 | Leucine Rich Repeat |
XP_057780181.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 32 | 53 | 2.1e-24 | 81.0 | Leucine Rich Repeat |
XP_057780181.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 55 | 77 | 2.1e-24 | 81.0 | Leucine Rich Repeat |
XP_057780181.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 129 | 150 | 2.1e-24 | 81.0 | Leucine Rich Repeat |
XP_057780181.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 129 | 187 | 6.7e-22 | 77.7 | Leucine rich repeat |
XP_057780181.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 258 | 279 | 2.1e-24 | 81.0 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。