Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004735

染色体: Chr08 坐标: 56742888-56747153 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004735
名称SmilChr08G004735
描述receptor kinase-like protein Xa21
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56742888 - 56747153 / -

ID 对照

NCBI Gene IDLOC130999302
GeneID130999302
locus_tag-
NCBI NameLOC130999302
原始查询SmilChr08G004735

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor kinase-like protein Xa21
产物receptor kinase-like protein Xa21
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=33.7; qcov=1.05; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=38; qcov=1.01; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:130999302

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057780794.1
2 Nucleus 细胞核 0.00000 XP_057780794.1
3 Chromosome 染色体 0.00000 XP_057780794.1
4 Centromere 着丝粒 0.00000 XP_057780794.1
5 Chromatin 染色质 0.00000 XP_057780794.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56743372 GA G 1bp_deletion frameshift_variant 3 A13,B60,C32
Chr8:56743372 GA G 1bp_deletion CDS_variant 3 A13,B60,C32
Chr8:56743409 C CAA 2bp_insertion frameshift_variant 1 C73
Chr8:56743409 C CAA 2bp_insertion CDS_variant 1 C73
Chr8:56743435 G A EMS_canonical_SNV CDS_variant 2 C26,C73
Chr8:56743487 G A EMS_canonical_SNV stop_gained 1 B55
Chr8:56743487 G A EMS_canonical_SNV CDS_variant 1 B55
Chr8:56743559 C T EMS_canonical_SNV CDS_variant 3 B10,C75,C8
Chr8:56743623 C T EMS_canonical_SNV CDS_variant 4 A9,B99,C68,C87
Chr8:56743634 T TAA 2bp_insertion frameshift_variant 3 B110,B40,B5
Chr8:56743634 T TAA 2bp_insertion CDS_variant 3 B110,B40,B5
Chr8:56743655 C T EMS_canonical_SNV CDS_variant 4 A21,B115,B91,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780794.1
1187 aa
N
1
594
1187
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF13855 LRR_8 130-182 aa PF00560 LRR_1 147-169 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 195-216 aa PF00560 LRR_1 268-290 aa PF00560 LRR_1 292-314 aa PF00560 LRR_1 366-387 aa PF13855 LRR_8 366-424 aa PF00560 LRR_1 439-460 aa PF13855 LRR_8 439-497 aa PF00560 LRR_1 514-536 aa PF00560 LRR_1 588-609 aa PF00560 LRR_1 612-632 aa PF00560 LRR_1 660-681 aa PF00560 LRR_1 707-729 aa PF00560 LRR_1 731-752 aa PF00069 Pkinase 875-1043 aa PF07714 PK_Tyr_Ser-Thr 878-1033 aa
XP_057780795.1
1187 aa
N
1
594
1187
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF13855 LRR_8 130-182 aa PF00560 LRR_1 147-169 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 195-216 aa PF00560 LRR_1 268-290 aa PF00560 LRR_1 292-314 aa PF00560 LRR_1 366-387 aa PF13855 LRR_8 366-424 aa PF00560 LRR_1 439-460 aa PF13855 LRR_8 439-497 aa PF00560 LRR_1 514-536 aa PF00560 LRR_1 588-609 aa PF00560 LRR_1 612-632 aa PF00560 LRR_1 660-681 aa PF00560 LRR_1 707-729 aa PF00560 LRR_1 731-752 aa PF00069 Pkinase 875-1043 aa PF07714 PK_Tyr_Ser-Thr 878-1033 aa
XP_057780796.1
1187 aa
N
1
594
1187
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF13855 LRR_8 130-182 aa PF00560 LRR_1 147-169 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 195-216 aa PF00560 LRR_1 268-290 aa PF00560 LRR_1 292-314 aa PF00560 LRR_1 366-387 aa PF13855 LRR_8 366-424 aa PF00560 LRR_1 439-460 aa PF13855 LRR_8 439-497 aa PF00560 LRR_1 514-536 aa PF00560 LRR_1 588-609 aa PF00560 LRR_1 612-632 aa PF00560 LRR_1 660-681 aa PF00560 LRR_1 707-729 aa PF00560 LRR_1 731-752 aa PF00069 Pkinase 875-1043 aa PF07714 PK_Tyr_Ser-Thr 878-1033 aa
XP_057780797.1
1156 aa
N
1
578
1156
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF13855 LRR_8 130-182 aa PF00560 LRR_1 147-169 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 195-216 aa PF00560 LRR_1 268-290 aa PF00560 LRR_1 292-314 aa PF00560 LRR_1 366-387 aa PF13855 LRR_8 366-424 aa PF00560 LRR_1 439-460 aa PF13855 LRR_8 439-497 aa PF00560 LRR_1 514-536 aa PF00560 LRR_1 588-609 aa PF00560 LRR_1 612-632 aa PF00560 LRR_1 660-681 aa PF00560 LRR_1 707-729 aa PF00560 LRR_1 731-752 aa PF00069 Pkinase 875-1144 aa PF07714 PK_Tyr_Ser-Thr 878-1147 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780794.1 Pfam PF13855 LRR_8 Repeat 130 182 3.8e-54 181.0 Leucine rich repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 147 169 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 171 193 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 195 216 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 268 290 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 292 314 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 366 387 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF13855 LRR_8 Repeat 366 424 3.8e-54 181.0 Leucine rich repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 439 460 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF13855 LRR_8 Repeat 439 497 3.8e-54 181.0 Leucine rich repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 514 536 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 588 609 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 612 632 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 660 681 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 707 729 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00560 LRR_1 Repeat 731 752 3.8e-60 187.5 Leucine Rich Repeat
XP_057780794.1 Pfam PF00069 Pkinase Domain 875 1043 3.7e-34 119.1 Protein kinase domain
XP_057780794.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 878 1033 1.2e-33 117.3 Protein tyrosine and serine/threonine kinase
XP_057780795.1 Pfam PF13855 LRR_8 Repeat 130 182 3.8e-54 181.0 Leucine rich repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 147 169 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 171 193 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 195 216 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 268 290 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 292 314 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 366 387 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF13855 LRR_8 Repeat 366 424 3.8e-54 181.0 Leucine rich repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 439 460 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF13855 LRR_8 Repeat 439 497 3.8e-54 181.0 Leucine rich repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 514 536 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 588 609 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 612 632 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 660 681 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 707 729 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00560 LRR_1 Repeat 731 752 3.8e-60 187.5 Leucine Rich Repeat
XP_057780795.1 Pfam PF00069 Pkinase Domain 875 1043 3.7e-34 119.1 Protein kinase domain
XP_057780795.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 878 1033 1.2e-33 117.3 Protein tyrosine and serine/threonine kinase
XP_057780796.1 Pfam PF13855 LRR_8 Repeat 130 182 3.8e-54 181.0 Leucine rich repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 147 169 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 171 193 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 195 216 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 268 290 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 292 314 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 366 387 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF13855 LRR_8 Repeat 366 424 3.8e-54 181.0 Leucine rich repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 439 460 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF13855 LRR_8 Repeat 439 497 3.8e-54 181.0 Leucine rich repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 514 536 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 588 609 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 612 632 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 660 681 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 707 729 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00560 LRR_1 Repeat 731 752 3.8e-60 187.5 Leucine Rich Repeat
XP_057780796.1 Pfam PF00069 Pkinase Domain 875 1043 3.7e-34 119.1 Protein kinase domain
XP_057780796.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 878 1033 1.2e-33 117.3 Protein tyrosine and serine/threonine kinase
XP_057780797.1 Pfam PF13855 LRR_8 Repeat 130 182 5e-54 180.6 Leucine rich repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 147 169 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 171 193 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 195 216 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 268 290 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 292 314 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 366 387 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF13855 LRR_8 Repeat 366 424 5e-54 180.6 Leucine rich repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 439 460 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF13855 LRR_8 Repeat 439 497 5e-54 180.6 Leucine rich repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 514 536 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 588 609 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 612 632 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 660 681 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 707 729 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00560 LRR_1 Repeat 731 752 1.6e-60 188.5 Leucine Rich Repeat
XP_057780797.1 Pfam PF00069 Pkinase Domain 875 1144 4.3e-39 135.2 Protein kinase domain
XP_057780797.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 878 1147 4e-39 135.2 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057924814.1
TATATATATATATATGATGGTTATTGGATGCACTTATTAGCTACTTAATTATCATAATACAATCATAATTTGCAGCCATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTTGACCAACTCCACCTCCGTC...
XM_057924812.1
TATATATATATATATGATGGTTATTGGATGCACTTATTAGCTACTTAATTATCATAATACAATCATAATTTGCAGCCATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTTGACCAACTCCACCTCCGTC...

CDS

4 records

下载 CDS FASTA
LOC130999302
ATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTTGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCATCACAGAGTAGCTACCTTGAATCTCTCCAACATGGCTCTCTC...
LOC130999302
ATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTTGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCATCACAGAGTAGCTACCTTGAATCTCTCCAACATGGCTCTCTC...

Protein

4 records

下载 Protein FASTA
XP_057780794.1
MEKKLSCILLYAFLITITFPMLSSEAKAKQPLSLATDQTALLSLKHTSLLLATNLTNSTSVCTWIGVTCSFRHHRVATLNLSNMALSGTIPPQLGHLSFLVSLDLTNNLFYGDLPQELSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLSVQFNHLSGAIPSAIFNISTLVAMAFTHNELSGSLPTDMCHNLPFLTVIGLSENQLSGAIS...
XP_057780795.1
MEKKLSCILLYAFLITITFPMLSSEAKAKQPLSLATDQTALLSLKHTSLLLATNLTNSTSVCTWIGVTCSFRHHRVATLNLSNMALSGTIPPQLGHLSFLVSLDLTNNLFYGDLPQELSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLSVQFNHLSGAIPSAIFNISTLVAMAFTHNELSGSLPTDMCHNLPFLTVIGLSENQLSGAIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器