当前解析结果
SmilChr08G004736| 统一新 Gene ID | SmilChr08G004736 |
|---|---|
| 名称 | SmilChr08G004736 |
| 描述 | LRR receptor kinase SERK2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56763531 - 56764187 / - |
| NCBI Gene ID | LOC130998793 |
|---|---|
| GeneID | 130998793 |
| locus_tag | - |
| NCBI Name | LOC130998793 |
| 原始查询 | SmilChr08G004736 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor kinase SERK2-like |
| 产物 | LRR receptor kinase SERK2-like |
| Arabidopsis | AT5G20480 (EFR)EF-TU receptor [Source:NCBI gene (formerly Entrezgene);Acc:832170] identity=36.4; qcov=1.1; evalue=1.88e-38; confidence=medium |
| Rice | Os11g0559200 (Xa21*)- identity=45.7; qcov=0.954; evalue=2.23e-45; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780183.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780183.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780183.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780183.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780183.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56763651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:56763655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:56763729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,D10 |
Chr8:56763852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr8:56763861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,C39,C47 |
Chr8:56763863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,D6 |
Chr8:56763890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B3,B6,C53 |
Chr8:56763900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C52,C54 |
Chr8:56763962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B57 |
Chr8:56763972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B42,C82 |
Chr8:56764034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:56764119 |
T |
TAC |
2bp_insertion | frameshift_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780183.1PF00560
LRR_1 58-77 aa
PF13855
LRR_8 102-162 aa
PF12799
LRR_4 103-143 aa
PF00560
LRR_1 104-125 aa
PF13855
LRR_8 126-186 aa
PF00560
LRR_1 127-149 aa
PF00560
LRR_1 151-173 aa
PF00560
LRR_1 175-196 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780183.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 58 | 77 | 2.2e-20 | 69.0 | Leucine Rich Repeat |
XP_057780183.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 102 | 162 | 4.6e-17 | 62.3 | Leucine rich repeat |
XP_057780183.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 103 | 143 | 2.2e-16 | 60.2 | Leucine Rich repeats (2 copies) |
XP_057780183.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 104 | 125 | 2.2e-20 | 69.0 | Leucine Rich Repeat |
XP_057780183.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 126 | 186 | 4.6e-17 | 62.3 | Leucine rich repeat |
XP_057780183.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 127 | 149 | 2.2e-20 | 69.0 | Leucine Rich Repeat |
XP_057780183.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 151 | 173 | 2.2e-20 | 69.0 | Leucine Rich Repeat |
XP_057780183.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 175 | 196 | 2.2e-20 | 69.0 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。