Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004745`

染色体: Chr08 坐标: 56826806-56829430 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004745`
名称	SmilChr08G004745
描述	uncharacterized SmilChr08G004745
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	56826806 - 56829430 / `-`

ID 对照

NCBI Gene ID	`LOC130999409`
GeneID	`130999409`
locus_tag	`-`
NCBI Name	`LOC130999409`
原始查询	`SmilChr08G004745`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Putative methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842689]; symbol=AT1G63855; hit=AT1G63855; species=arabidopsis; confidence=high
产物	Putative methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842689]; symbol=AT1G63855; hit=AT1G63855; species=arabidopsis; confidence=high
Arabidopsis	`AT1G63855` (AT1G63855) Putative methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842689] identity=71; qcov=0.662; evalue=1.2e-62; confidence=high
Rice	`Os02g0120300` - identity=56.3; qcov=0.843; evalue=1.35e-62; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF10294 (Methyltransf_16)
InterPro	-
eggNOG	-
NR	GeneID:130999409

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057780913.1`
2	Cytoplasm	细胞质	0.80000	`XP_057780913.1`
3	Nucleus	细胞核	0.80000	`XP_057780914.1`
4	Nucleoplasm	核质	0.20000	`XP_057780913.1`
5	Chromosome	染色体	0.00000	`XP_057780914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:56827718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr8:56828414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,D11
`Chr8:56828418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr8:56828597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr8:56828613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr8:56828616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B15,B30,B62,C69
`Chr8:56828782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B18,B33,B34,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780913.1

254 aa

127

254

Methyltransf_16

PF10294 Methyltransf_16 59-207 aa

XP_057780914.1

207 aa

104

207

Methyltransf_16

PF10294 Methyltransf_16 59-182 aa

XP_057780915.1

198 aa

198

Methyltransf_16

PF10294 Methyltransf_16 59-182 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780913.1`	Pfam	`PF10294`	Methyltransf_16	Family	59	207	2.5e-20	73.7	Lysine methyltransferase
`XP_057780914.1`	Pfam	`PF10294`	Methyltransf_16	Family	59	182	3.9e-16	60.0	Lysine methyltransferase
`XP_057780915.1`	Pfam	`PF10294`	Methyltransf_16	Family	59	182	3.8e-16	60.0	Lysine methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057924932.1
ATTGCGCTTTCTCTACTGGTAATAAGCAATTCATTTACACAGAAGTCGCAGCTTTCTGCTTAATTACGGCCATTTCCATGGCTTCGAGAACCCAGAGCAACGGACGCAGCTTCGAATTGGAGCTCCAACTCGAACAAGAAGTGGAAAATAAGCCCCCAACCGTTGAGAAGGATGCGGAAGATTCAATCGAATCATCCCCTAATCGAGAAATGACCACGTACTCGCAGCATTACTTTGGCAGTATCAGAGATGGTTTCTCC...

XM_057924930.1
ATTGCGCTTTCTCTACTGGTAATAAGCAATTCATTTACACAGAAGTCGCAGCTTTCTGCTTAATTACGGCCATTTCCATGGCTTCGAGAACCCAGAGCAACGGACGCAGCTTCGAATTGGAGCTCCAACTCGAACAAGAAGTGGAAAATAAGCCCCCAACCGTTGAGAAGGATGCGGAAGATTCAATCGAATCATCCCCTAATCGAGAAATGACCACGTACTCGCAGCATTACTTTGGCAGTATCAGAGATGGTTTCTCC...

CDS

3 records

下载 CDS FASTA

LOC130999409
ATGGCTTCGAGAACCCAGAGCAACGGACGCAGCTTCGAATTGGAGCTCCAACTCGAACAAGAAGTGGAAAATAAGCCCCCAACCGTTGAGAAGGATGCGGAAGATTCAATCGAATCATCCCCTAATCGAGAAATGACCACGTACTCGCAGCATTACTTTGGCAGTATCAGAGATGGTTTCTCCATCAGCATCATTGAGAATATGAAAGAAGAATACGGTCTATTTGTGTGGCCTTCAAGCGTCATTCTGGCTGAGTATGT...

Protein

3 records

下载 Protein FASTA

XP_057780913.1
MASRTQSNGRSFELELQLEQEVENKPPTVEKDAEDSIESSPNREMTTYSQHYFGSIRDGFSISIIENMKEEYGLFVWPSSVILAEYVWQQKSRFSGVNVVELGAGTSLPGLVAAKVGADVTLTDDLSKAEVLSNMRRVCNINDLKCKVLGVTWGVFEAPIFTLHPKIILGADVLYDTSAFDDLFSTVTFLLQKCPDSVFITTYHNRSGHHLIEFLMEKWRLKCTKLLDGFSLLPPHKASKLSGDIQLAELFWMN

XP_057780914.1
MASRTQSNGRSFELELQLEQEVENKPPTVEKDAEDSIESSPNREMTTYSQHYFGSIRDGFSISIIENMKEEYGLFVWPSSVILAEYVWQQKSRFSGVNVVELGAGTSLPGLVAAKVGADVTLTDDLSKAEVLSNMRRVCNINDLKCKVLGVTWGVFEAPIFTLHPKIILGADVLYDTSEMPRFCFHHHLSQQKVLLQTPLQLPSLQT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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