Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004749`

染色体: Chr08 坐标: 56860064-56861868 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004749`
名称	SmilChr08G004749
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	56860064 - 56861868 / `-`

ID 对照

NCBI Gene ID	`LOC130999417`
GeneID	`130999417`
locus_tag	`-`
NCBI Name	`LOC130999417`
原始查询	`SmilChr08G004749`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=34.8; qcov=0.917; evalue=1.42e-117; confidence=low
Rice	`Os10g0495200` (Rf4) - identity=29.1; qcov=0.912; evalue=3.97e-82; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999417

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780918.1`
2	Nucleus	细胞核	0.00000	`XP_057780918.1`
3	Chromosome	染色体	0.00000	`XP_057780918.1`
4	Centromere	着丝粒	0.00000	`XP_057780918.1`
5	Chromatin	染色质	0.00000	`XP_057780918.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:56860206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B78,C85
`Chr8:56860248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:56860272`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C67
`Chr8:56860272`	`C`	`CA`	1bp_insertion	CDS_variant	1	C67
`Chr8:56860302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B82
`Chr8:56860314`	`A`	`AGT`	2bp_insertion	frameshift_variant	2	A8,C79
`Chr8:56860314`	`A`	`AGT`	2bp_insertion	CDS_variant	2	A8,C79
`Chr8:56860424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,C36
`Chr8:56860425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,C72
`Chr8:56860433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,C36
`Chr8:56860455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,C36
`Chr8:56860479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780918.1

577 aa

288

577

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

TPR_24

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_1

PPR_3

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_long

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF12854 PPR_1 149-178 aa PF13041 PPR_2 153-203 aa PF01535 PPR 156-180 aa PF13812 PPR_3 221-271 aa PF12854 PPR_1 224-252 aa PF13041 PPR_2 226-275 aa PF23276 TPR_24 227-318 aa PF01535 PPR 229-259 aa PF12854 PPR_1 257-289 aa PF13041 PPR_2 261-310 aa PF01535 PPR 265-292 aa PF13812 PPR_3 285-341 aa PF12854 PPR_1 294-325 aa PF01535 PPR 299-326 aa PF13812 PPR_3 323-379 aa PF12854 PPR_1 329-356 aa PF13041 PPR_2 331-380 aa PF01535 PPR 335-363 aa PF12854 PPR_1 363-390 aa PF01535 PPR 369-391 aa PF12854 PPR_1 399-430 aa PF13812 PPR_3 399-446 aa PF13041 PPR_2 402-450 aa PF01535 PPR 404-431 aa PF12854 PPR_1 434-463 aa PF01535 PPR 440-468 aa PF13041 PPR_2 444-485 aa PF17177 PPR_long 452-569 aa PF23276 TPR_24 457-555 aa PF13812 PPR_3 460-514 aa PF12854 PPR_1 467-499 aa PF13041 PPR_2 471-520 aa PF01535 PPR 474-504 aa PF12854 PPR_1 502-534 aa PF13041 PPR_2 506-550 aa PF01535 PPR 509-539 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	149	178	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	153	203	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	156	180	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF13812`	PPR_3	Repeat	221	271	3e-53	178.5	Pentatricopeptide repeat domain
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	224	252	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	226	275	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF23276`	TPR_24	Repeat	227	318	1e-28	100.6	Pentatricopeptide repeat-containing protein
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	229	259	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	257	289	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	261	310	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	265	292	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF13812`	PPR_3	Repeat	285	341	3e-53	178.5	Pentatricopeptide repeat domain
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	294	325	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	299	326	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF13812`	PPR_3	Repeat	323	379	3e-53	178.5	Pentatricopeptide repeat domain
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	329	356	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	331	380	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	335	363	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	363	390	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	369	391	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	399	430	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13812`	PPR_3	Repeat	399	446	3e-53	178.5	Pentatricopeptide repeat domain
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	402	450	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	404	431	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	434	463	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	440	468	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	444	485	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF17177`	PPR_long	Repeat	452	569	1.6e-25	90.4	Pentacotripeptide-repeat region of PRORP
`XP_057780918.1`	Pfam	`PF23276`	TPR_24	Repeat	457	555	1e-28	100.6	Pentatricopeptide repeat-containing protein
`XP_057780918.1`	Pfam	`PF13812`	PPR_3	Repeat	460	514	3e-53	178.5	Pentatricopeptide repeat domain
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	467	499	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	471	520	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	474	504	9.7e-82	264.4	PPR repeat
`XP_057780918.1`	Pfam	`PF12854`	PPR_1	Repeat	502	534	6.9e-113	368.7	PPR repeat
`XP_057780918.1`	Pfam	`PF13041`	PPR_2	Repeat	506	550	5.4e-129	420.9	PPR repeat family
`XP_057780918.1`	Pfam	`PF01535`	PPR	Repeat	509	539	9.7e-82	264.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924935.1
AATAATGAGGTCAAACCACGCCGCCATGTTTCTGGGTAGAATTTTGTCAAATTCTTCACCTAAATTCTCCACTTTTGCCATCCCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACAATGCCGTCGCTCTATTTCGGGAAATGGTGAGGACGCAGCCGCTCCCTTATGTTT...

CDS

1 records

下载 CDS FASTA

LOC130999417
ATGAGGTCAAACCACGCCGCCATGTTTCTGGGTAGAATTTTGTCAAATTCTTCACCTAAATTCTCCACTTTTGCCATCCCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACAATGCCGTCGCTCTATTTCGGGAAATGGTGAGGACGCAGCCGCTCCCTTATGTTTCTGT...

Protein

1 records

下载 Protein FASTA

XP_057780918.1
MRSNHAAMFLGRILSNSSPKFSTFAIPSPHYQSFLVPSFHFDNASCQMRRHFSAYPRFDFGSIREPNNAVALFREMVRTQPLPYVSVFSKLLSTVVKMEQYSLALHLIDEMLQRDVPVDHYILNIAIDCYCRQKRPDFGFAILGIFFKRGYDPDVVTFNTLIKGLLLVGRIPEATKVLWKLVVYQLCEPNEQTHSTMINGICKAVGTLHALELLCLLEKEKGICKPNLYSYNAVIDGLCKEGKVDDALQLFSSLGDKGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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