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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004751

染色体: Chr08 坐标: 56869317-56871323 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004751
名称SmilChr08G004751
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56869317 - 56871323 / -

ID 对照

NCBI Gene IDLOC130999416
GeneID130999416
locus_tag-
NCBI NameLOC130999416
原始查询SmilChr08G004751

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=34.5; qcov=1; evalue=2.07e-133; confidence=low
RiceOs08g0107800
-
identity=33; qcov=0.928; evalue=2.77e-98; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999416

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780917.1
2 Chloroplast 叶绿体 0.20000 XP_057780917.1
3 Nucleus 细胞核 0.00000 XP_057780917.1
4 Chromosome 染色体 0.00000 XP_057780917.1
5 Centromere 着丝粒 0.00000 XP_057780917.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56869417 G A EMS_canonical_SNV CDS_variant 1 B60
Chr8:56869472 C T EMS_canonical_SNV CDS_variant 1 B88
Chr8:56869482 G A EMS_canonical_SNV CDS_variant 1 B129
Chr8:56869533 C T EMS_canonical_SNV CDS_variant 2 C39,C47
Chr8:56869617 C T EMS_canonical_SNV CDS_variant 1 C72
Chr8:56869696 G A EMS_canonical_SNV CDS_variant 2 B2,B82
Chr8:56869785 C T EMS_canonical_SNV CDS_variant 4 B103,C39,C47,C86
Chr8:56869872 C T EMS_canonical_SNV CDS_variant 5 B107,B122,B13,B16,C34
Chr8:56869883 C T EMS_canonical_SNV CDS_variant 1 B79
Chr8:56870088 C T EMS_canonical_SNV CDS_variant 2 C13,C22
Chr8:56870143 G A EMS_canonical_SNV CDS_variant 3 B101,B78,C85
Chr8:56870165 GC G 1bp_deletion frameshift_variant 2 B122,B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780917.1
611 aa
N
1
306
611
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 82-131 aa PF01535 PPR 87-113 aa PF13041 PPR_2 152-202 aa PF01535 PPR 155-179 aa PF12854 PPR_1 186-213 aa PF13041 PPR_2 188-239 aa PF01535 PPR 191-217 aa PF12854 PPR_1 223-251 aa PF13812 PPR_3 224-270 aa PF13041 PPR_2 225-274 aa PF23276 TPR_24 228-316 aa PF01535 PPR 229-258 aa PF13812 PPR_3 250-303 aa PF12854 PPR_1 256-289 aa PF13041 PPR_2 260-309 aa PF01535 PPR 263-290 aa PF12854 PPR_1 293-324 aa PF01535 PPR 301-325 aa PF13812 PPR_3 323-378 aa PF12854 PPR_1 328-355 aa PF13041 PPR_2 330-379 aa PF01535 PPR 333-361 aa PF12854 PPR_1 362-389 aa PF13041 PPR_2 365-412 aa PF01535 PPR 368-390 aa PF12854 PPR_1 397-429 aa PF23276 TPR_24 397-497 aa PF13812 PPR_3 398-445 aa PF13041 PPR_2 401-448 aa PF01535 PPR 403-430 aa PF12854 PPR_1 433-464 aa PF01535 PPR 439-468 aa PF13041 PPR_2 439-484 aa PF13812 PPR_3 459-516 aa PF12854 PPR_1 466-497 aa PF13041 PPR_2 470-519 aa PF01535 PPR 473-502 aa PF17177 PPR_long 488-603 aa PF23276 TPR_24 493-590 aa PF13812 PPR_3 494-548 aa PF12854 PPR_1 501-533 aa PF01535 PPR 508-538 aa PF13041 PPR_2 508-554 aa PF12854 PPR_1 536-568 aa PF13041 PPR_2 540-585 aa PF01535 PPR 543-573 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 82 131 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 87 113 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 152 202 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 155 179 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 186 213 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 188 239 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 191 217 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 223 251 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13812 PPR_3 Repeat 224 270 2.6e-62 207.5 Pentatricopeptide repeat domain
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 225 274 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF23276 TPR_24 Repeat 228 316 1.2e-35 123.0 Pentatricopeptide repeat-containing protein
XP_057780917.1 Pfam PF01535 PPR Repeat 229 258 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF13812 PPR_3 Repeat 250 303 2.6e-62 207.5 Pentatricopeptide repeat domain
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 256 289 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 260 309 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 263 290 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 293 324 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF01535 PPR Repeat 301 325 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF13812 PPR_3 Repeat 323 378 2.6e-62 207.5 Pentatricopeptide repeat domain
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 328 355 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 330 379 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 333 361 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 362 389 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 365 412 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 368 390 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 397 429 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF23276 TPR_24 Repeat 397 497 1.2e-35 123.0 Pentatricopeptide repeat-containing protein
XP_057780917.1 Pfam PF13812 PPR_3 Repeat 398 445 2.6e-62 207.5 Pentatricopeptide repeat domain
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 401 448 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 403 430 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 433 464 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF01535 PPR Repeat 439 468 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 439 484 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF13812 PPR_3 Repeat 459 516 2.6e-62 207.5 Pentatricopeptide repeat domain
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 466 497 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 470 519 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 473 502 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF17177 PPR_long Repeat 488 603 2.6e-27 96.3 Pentacotripeptide-repeat region of PRORP
XP_057780917.1 Pfam PF23276 TPR_24 Repeat 493 590 1.2e-35 123.0 Pentatricopeptide repeat-containing protein
XP_057780917.1 Pfam PF13812 PPR_3 Repeat 494 548 2.6e-62 207.5 Pentatricopeptide repeat domain
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 501 533 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF01535 PPR Repeat 508 538 3.6e-92 297.1 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 508 554 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF12854 PPR_1 Repeat 536 568 8.5e-130 422.8 PPR repeat
XP_057780917.1 Pfam PF13041 PPR_2 Repeat 540 585 2e-166 540.8 PPR repeat family
XP_057780917.1 Pfam PF01535 PPR Repeat 543 573 3.6e-92 297.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924934.1
ACAAAACCCGATCTTTCCTTCTTCAACAGCGACCTTCCCCAATTCTTCAGCTTTCACATCTCAAATCCTACAAAACTATCCCAAGAATGAGCTCGAACCACGCCGCCATGTTTCTGCCTAGAATTTTGTCAAATTCGTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTTGAT...

CDS

1 records

下载 CDS FASTA
LOC130999416
ATGAGCTCGAACCACGCCGCCATGTTTCTGCCTAGAATTTTGTCAAATTCGTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTTGATTTTGAATCTATACGTAAGCCTGATGATGCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTAAGCTTTT...

Protein

1 records

下载 Protein FASTA
XP_057780917.1
MSSNHAAMFLPRILSNSSSKFSTFAIASPHYQSFLLPSFHFDNASCQMRHFSAYPRFDFESIRKPDDAVALFRDMMRTEPLPSVKLFSRLLSAVVKLKQYSAALHLFDKMLQRDAPVNHYTLSIAIDCYCRLKRPDFGFAILGSFFKRGFEPTVVTFNTLVKGLLFVGRIPEAAKLLGKLSAYQLCEPDEYTYNTIINGLCKDGDILQAIDLLCSLEKGKGSCKPDVYAYNIVIDGLCKEGKVDEALQLFSTLGDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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