当前解析结果
SmilChr08G004753| 统一新 Gene ID | SmilChr08G004753 |
|---|---|
| 名称 | SmilChr08G004753 |
| 描述 | uncharacterized SmilChr08G004753 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56881335 - 56882296 / + |
| NCBI Gene ID | LOC130999421 |
|---|---|
| GeneID | 130999421 |
| locus_tag | - |
| NCBI Name | LOC130999421 |
| 原始查询 | SmilChr08G004753 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939]; symbol=AT3G07510; hit=AT3G07510; species=arabidopsis; confidence=high |
| 产物 | maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939]; symbol=AT3G07510; hit=AT3G07510; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G07510 (AT3G07510)maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939] identity=81; qcov=0.932; evalue=5.6e-89; confidence=high |
| Rice | Os10g0178200- identity=64; qcov=0.896; evalue=1.03e-67; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999421 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057780925.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057780925.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057780925.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780925.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780925.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56881679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr8:56881754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr8:56881970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,A20,B72,C50,D2 |
Chr8:56881976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:56882027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr8:56882034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B37,B73,C38,D6 |
Chr8:56882046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:56882048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,B60,B85 |
Chr8:56882049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:56882055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B60,B85 |
Chr8:56882083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:56882113 |
CCG |
C |
2bp_deletion | frameshift_variant | 9 | A21,B27,B69,B87,C35,C54,C74,D2,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。