当前解析结果
SmilChr08G004757| 统一新 Gene ID | SmilChr08G004757 |
|---|---|
| 名称 | SmilChr08G004757 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56921543 - 56924432 / - |
| NCBI Gene ID | LOC130999425 |
|---|---|
| GeneID | 130999425 |
| locus_tag | - |
| NCBI Name | LOC130999425 |
| 原始查询 | SmilChr08G004757 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=27.35; qcov=0.89; evalue=3.72e-74; confidence=low |
| Rice | Os11g0681300- identity=29.5; qcov=0.752; evalue=1.58e-75; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0004803 (transposase activity); GO:0006313 (DNA transposition); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999425 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780929.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057780929.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56921695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr8:56921754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,B74 |
Chr8:56921778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:56921807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr8:56921856 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,D9 |
Chr8:56922116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr8:56922142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C67 |
Chr8:56922159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr8:56922189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:56922193 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B96 |
Chr8:56922193 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B96 |
Chr8:56922196 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780929.1PF03101
FAR1 4-48 aa
PF21056
ZSWIM1-3_RNaseH-like 132-251 aa
PF10551
MULE 170-261 aa
PF00872
Transposase_mut 200-308 aa
PF04434
SWIM 462-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780929.1 |
Pfam | PF03101 |
FAR1 | Domain | 4 | 48 | 8.2e-07 | 30.4 | FAR1 DNA-binding domain |
XP_057780929.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 132 | 251 | 3.7e-08 | 34.1 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057780929.1 |
Pfam | PF10551 |
MULE | Domain | 170 | 261 | 6.2e-26 | 91.3 | MULE transposase domain |
XP_057780929.1 |
Pfam | PF00872 |
Transposase_mut | Family | 200 | 308 | 4.6e-05 | 23.2 | Transposase, Mutator family |
XP_057780929.1 |
Pfam | PF04434 |
SWIM | Domain | 462 | 481 | 0.00074 | 19.7 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。