当前解析结果
SmilChr08G004759| 统一新 Gene ID | SmilChr08G004759 |
|---|---|
| 名称 | SmilChr08G004759 |
| 描述 | ADP,ATP carrier protein, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56961528 - 56963131 / - |
| NCBI Gene ID | LOC130998802 |
|---|---|
| GeneID | 130998802 |
| locus_tag | - |
| NCBI Name | LOC130998802 |
| 原始查询 | SmilChr08G004759 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ADP,ATP carrier protein, mitochondrial-like |
| 产物 | ADP%2CATP carrier protein%2C mitochondrial-like |
| Arabidopsis | AT5G13490 (AAC2)ADP/ATP carrier 2 [Source:NCBI gene (formerly Entrezgene);Acc:831193] identity=49.5; qcov=0.926; evalue=2.34e-81; confidence=high |
| Rice | Os05g0302700- identity=48.7; qcov=0.968; evalue=2.62e-84; confidence=high |
| GO | GO:0005471 (ATP:ADP antiporter activity); GO:0005743 (mitochondrial inner membrane); GO:0140021 (mitochondrial ADP transmembrane transport); GO:1990544 (mitochondrial ATP transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998802 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057780190.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057780190.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057780190.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780190.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780190.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56961730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B109,C11,C69,C74 |
Chr8:56961773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr8:56961795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr8:56961821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B137,B18,B67,B85 |
Chr8:56961842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:56961950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B35 |
Chr8:56961962 |
GAA |
G |
2bp_deletion | frameshift_variant | 6 | A21,A3,B60,C80,C82,D4 |
Chr8:56962129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B104,B75 |
Chr8:56962174 |
T |
TA |
1bp_insertion | frameshift_variant | 10 | A21,A3,A8,B115,B22,B60,B83,C3,C48,C79 |
Chr8:56962224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:56962280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:56962299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,C11,C69,C74,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780190.1PF00153
Mito_carr 39-119 aa
PF00153
Mito_carr 138-223 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780190.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 39 | 119 | 3.9e-40 | 136.2 | Mitochondrial carrier protein |
XP_057780190.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 138 | 223 | 3.9e-40 | 136.2 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。