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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004760

染色体: Chr08 坐标: 56971185-56974658 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004760
名称SmilChr08G004760
描述pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56971185 - 56974658 / -

ID 对照

NCBI Gene IDLOC130999436
GeneID130999436
locus_tag-
NCBI NameLOC130999436
原始查询SmilChr08G004760

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g63330-like
产物pentatricopeptide repeat-containing protein At1g63330-like
ArabidopsisAT1G63130 (AT1G63130)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842617]
identity=36.6; qcov=0.841; evalue=1.2e-132; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=33.8; qcov=0.874; evalue=1.72e-116; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999436

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780945.1
2 Chloroplast 叶绿体 0.20000 XP_057780945.1
3 Nucleus 细胞核 0.00000 XP_057780945.1
4 Chromosome 染色体 0.00000 XP_057780945.1
5 Centromere 着丝粒 0.00000 XP_057780945.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56971452 C CT 1bp_insertion frameshift_variant 94 A1,A13,A15,A20,A7,B100,B105,B107,B109,B110,B111,B113,B114,B118,B12,B122,B123,B124,B125,B126,B127,B128,B136,B138,B139,B15,B20,B21,B23,B25,B28,B30,B33,B36,B38,B39,B42,B43,B44,B45,B5,B50,B52,B56,B58,B59,B64,B66,B69,B7,B78,B80,B82,B85,B87,B9,B91,B95,B97,C10,C13,C16,C19,C2,C20,C21,C24,C27,C3,C30,C31,C40,C45,C46,C48,C51,C53,C55,C56,C58,C59,C60,C61,C62,C63,C64,C67,C71,C73,C76,C81,C84,C9,D7
Chr8:56971574 G A EMS_canonical_SNV CDS_variant 4 B133,B47,C15,C56
Chr8:56971587 ATG A 2bp_deletion frameshift_variant 19 A16,A7,B132,B133,B136,B137,B16,B41,B47,B81,B98,C14,C15,C16,C25,C26,C28,C41,C69
Chr8:56971591 T TAG 2bp_insertion frameshift_variant 19 A16,A7,B132,B133,B136,B137,B16,B41,B47,B81,B98,C14,C15,C16,C25,C26,C28,C41,C69
Chr8:56971674 C CA 1bp_insertion frameshift_variant 1 C14
Chr8:56971674 C CA 1bp_insertion CDS_variant 1 C14
Chr8:56971694 C T EMS_canonical_SNV CDS_variant 1 C46
Chr8:56971720 C T EMS_canonical_SNV CDS_variant 2 B104,C22
Chr8:56971752 C T EMS_canonical_SNV CDS_variant 3 B47,B8,C78
Chr8:56972936 C T EMS_canonical_SNV CDS_variant 1 B36
Chr8:56972940 G A EMS_canonical_SNV CDS_variant 5 B18,B4,B84,C37,D1
Chr8:56972994 C T EMS_canonical_SNV CDS_variant 1 B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780945.1
681 aa
N
1
340
681
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 84-131 aa PF13041 PPR_2 152-202 aa PF12854 PPR_1 186-213 aa PF13812 PPR_3 187-235 aa PF01535 PPR 191-217 aa PF12854 PPR_1 223-251 aa PF13812 PPR_3 224-270 aa PF13041 PPR_2 225-274 aa PF23276 TPR_24 227-318 aa PF01535 PPR 229-258 aa PF17177 PPR_long 243-340 aa PF13812 PPR_3 249-305 aa PF12854 PPR_1 256-288 aa PF13041 PPR_2 260-309 aa PF01535 PPR 263-291 aa PF13812 PPR_3 284-342 aa PF12854 PPR_1 293-324 aa PF01535 PPR 299-326 aa PF13041 PPR_2 299-343 aa PF13812 PPR_3 319-356 aa PF12854 PPR_1 328-355 aa PF13041 PPR_2 330-378 aa PF01535 PPR 333-363 aa PF13812 PPR_3 353-412 aa PF12854 PPR_1 362-390 aa PF13041 PPR_2 365-414 aa PF01535 PPR 368-398 aa PF13812 PPR_3 388-446 aa PF12854 PPR_1 397-427 aa PF13041 PPR_2 400-447 aa PF01535 PPR 403-433 aa PF13812 PPR_3 423-480 aa PF13041 PPR_2 436-484 aa PF01535 PPR 438-468 aa PF13812 PPR_3 459-515 aa PF12854 PPR_1 467-499 aa PF01535 PPR 474-503 aa PF23276 TPR_24 475-566 aa PF13041 PPR_2 479-518 aa PF12854 PPR_1 501-532 aa PF13041 PPR_2 505-554 aa PF01535 PPR 508-538 aa PF12854 PPR_1 536-567 aa PF13041 PPR_2 540-588 aa PF01535 PPR 543-572 aa PF23276 TPR_24 561-657 aa PF13812 PPR_3 564-618 aa PF12854 PPR_1 571-604 aa PF13041 PPR_2 576-624 aa PF01535 PPR 578-608 aa PF12854 PPR_1 606-639 aa PF13041 PPR_2 611-655 aa PF01535 PPR 613-643 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 84 131 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 152 202 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 186 213 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 187 235 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF01535 PPR Repeat 191 217 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 223 251 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 224 270 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 225 274 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF23276 TPR_24 Repeat 227 318 9.9e-40 136.2 Pentatricopeptide repeat-containing protein
XP_057780945.1 Pfam PF01535 PPR Repeat 229 258 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF17177 PPR_long Repeat 243 340 9.8e-33 114.0 Pentacotripeptide-repeat region of PRORP
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 249 305 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 256 288 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 260 309 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 263 291 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 284 342 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 293 324 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF01535 PPR Repeat 299 326 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 299 343 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 319 356 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 328 355 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 330 378 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 333 363 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 353 412 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 362 390 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 365 414 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 368 398 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 388 446 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 397 427 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 400 447 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 403 433 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 423 480 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 436 484 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 438 468 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 459 515 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 467 499 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF01535 PPR Repeat 474 503 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF23276 TPR_24 Repeat 475 566 9.9e-40 136.2 Pentatricopeptide repeat-containing protein
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 479 518 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 501 532 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 505 554 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 508 538 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 536 567 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 540 588 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 543 572 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF23276 TPR_24 Repeat 561 657 9.9e-40 136.2 Pentatricopeptide repeat-containing protein
XP_057780945.1 Pfam PF13812 PPR_3 Repeat 564 618 3.8e-77 255.0 Pentatricopeptide repeat domain
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 571 604 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 576 624 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 578 608 7.2e-110 352.6 PPR repeat
XP_057780945.1 Pfam PF12854 PPR_1 Repeat 606 639 1.8e-150 489.0 PPR repeat
XP_057780945.1 Pfam PF13041 PPR_2 Repeat 611 655 7.4e-183 593.4 PPR repeat family
XP_057780945.1 Pfam PF01535 PPR Repeat 613 643 7.2e-110 352.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924962.1
TAACCAGTTCTACTTTACCTTTCTTCTCACAAAACCCTATCTTTCCTTCTTCAACAGCTACCTTCCCCAATTCTTCAGCTTTCACATCTCAAATCATACAATACTATCCCAAGAATGAGGTCGAACCACGCCGCCATGTTTCTAGCTAGAATTTTGTCTAATTCTTCATCTAAATTCTCCACTTTTACCATTGCTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAG...

CDS

1 records

下载 CDS FASTA
LOC130999436
ATGAGGTCGAACCACGCCGCCATGTTTCTAGCTAGAATTTTGTCTAATTCTTCATCTAAATTCTCCACTTTTACCATTGCTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTTGATTTTGAATCTATACGTAAGCCTGATGATGCCGTCGCTCTGTTTCGGGATATGATGAGAACGGAGCCGCGCCCTTATGTTACTCTTTT...

Protein

1 records

下载 Protein FASTA
XP_057780945.1
MRSNHAAMFLARILSNSSSKFSTFTIASPHYQSFLLPSFHFDNASCQMRHFSAYPRFDFESIRKPDDAVALFRDMMRTEPRPYVTLFTKLLSIVVKMKQYSLALHLFDEMLQRNAPVNHYTLSIAIDCYCRQKRPDFGFAILGSFFKRGYEPDVVTFNTLVKGLLFVERIPEAAKLLGKLSAYQLCEPNEYTYSTIINGLCKAGDLLQATDLLCSLEKGKGSCKPNVYAYNIVIDGLCKEGKVDEALQLFSTLSDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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