Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004765

染色体: Chr08 坐标: 57005684-57006588 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004765
名称SmilChr08G004765
描述uncharacterized SmilChr08G004765
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57005684 - 57006588 / -

ID 对照

NCBI Gene IDLOC130999435
GeneID130999435
locus_tag-
NCBI NameLOC130999435
原始查询SmilChr08G004765

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述2Fe-2S ferredoxin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819936]; symbol=AT3G07480; hit=AT3G07480; species=arabidopsis; confidence=high
产物2Fe-2S ferredoxin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819936]; symbol=AT3G07480; hit=AT3G07480; species=arabidopsis; confidence=high
ArabidopsisAT3G07480 (AT3G07480)
2Fe-2S ferredoxin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819936]
identity=70.6; qcov=0.994; evalue=1.41e-79; confidence=high
RiceOs09g0514600
-
identity=67.7; qcov=1; evalue=2.15e-71; confidence=high
GOGO:0005739 (mitochondrion); GO:0051537 (2 iron, 2 sulfur cluster binding); GO:0140647 (P450-containing electron transport chain)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130999435

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780944.1
2 Mitochondrion matrix 线粒体基质 0.60000 XP_057780944.1
3 Nucleus 细胞核 0.00000 XP_057780944.1
4 Chromosome 染色体 0.00000 XP_057780944.1
5 Centromere 着丝粒 0.00000 XP_057780944.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57005964 G A EMS_canonical_SNV CDS_variant 1 B68
Chr8:57005973 C T EMS_canonical_SNV CDS_variant 1 B68
Chr8:57006084 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:57006090 C T EMS_canonical_SNV CDS_variant 5 B101,B13,B41,B78,C85
Chr8:57006130 C T EMS_canonical_SNV CDS_variant 1 B117
Chr8:57006236 C T EMS_canonical_SNV CDS_variant 1 B68
Chr8:57006327 G A EMS_canonical_SNV CDS_variant 1 C26
Chr8:57006345 G A EMS_canonical_SNV CDS_variant 1 C15
Chr8:57006379 G A EMS_canonical_SNV CDS_variant 4 B123,B14,B50,C8
Chr8:57006401 G A EMS_canonical_SNV stop_gained 1 A11
Chr8:57006401 G A EMS_canonical_SNV CDS_variant 1 A11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924961.1
AAAATAAAAAAACTAGACGATGTCATGAACAAAAATAGAAATCGAGGAAAGAAATAATTAGAAAGGAAAAATAAAAAAGAAAAAAGAAAAAAGAAAAAGAGCACTTGTGTTGGCAAATATAATCGACAAATTTCCCCCAATTTCTCCACTCAAACCCTCGAACTCAACAATGGCGATCTCCACTCTCCAGAAACTCGCCTCCCAAATTTCCAAATCACCCTCTCTCTCCGTCTCCTACCGCACCGTGATTGCGCGCACCT...

CDS

1 records

下载 CDS FASTA
LOC130999435
ATGGCGATCTCCACTCTCCAGAAACTCGCCTCCCAAATTTCCAAATCACCCTCTCTCTCCGTCTCCTACCGCACCGTGATTGCGCGCACCTCCGCCACCTCTGCCGCCCGCACCACCTCCGCGAAAGTTTCCGATCGGATCATTAAGCTCAGCGCCATCGACCCCGACGGCAACAAGCAAGACGTGGTTGGGCTCACCGGCCAGACTCTGCTCAAGGCATTGATCAACAAGGGCTTAATCGACCCCGCGTCCCACCGCCT...

Protein

1 records

下载 Protein FASTA
XP_057780944.1
MAISTLQKLASQISKSPSLSVSYRTVIARTSATSAARTTSAKVSDRIIKLSAIDPDGNKQDVVGLTGQTLLKALINKGLIDPASHRLEEIDACSAECEVHIAQEWLDKLPPQSYDEQYVLMRNSRNRVMNKHARLGCQVVLTPELQGMVVAVPEMKPWDTP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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