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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004775

染色体: Chr08 坐标: 57067199-57069431 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004775
名称SmilChr08G004775
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57067199 - 57069431 / +

ID 对照

NCBI Gene IDLOC130999442
GeneID130999442
locus_tag-
NCBI NameLOC130999442
原始查询SmilChr08G004775

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=37.7; qcov=0.98; evalue=1.7e-134; confidence=medium
RiceOs08g0107800
-
identity=32.1; qcov=0.926; evalue=1.6e-91; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999442

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780952.1
2 Chloroplast 叶绿体 0.20000 XP_057780952.1
3 Nucleus 细胞核 0.00000 XP_057780952.1
4 Chromosome 染色体 0.00000 XP_057780952.1
5 Centromere 着丝粒 0.00000 XP_057780952.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57067328 G A EMS_canonical_SNV CDS_variant 5 B117,B138,B54,C15,C77
Chr8:57067343 C T EMS_canonical_SNV CDS_variant 4 A9,B109,B32,C74
Chr8:57067379 C T EMS_canonical_SNV CDS_variant 4 B115,B84,B96,D4
Chr8:57067452 C T EMS_canonical_SNV CDS_variant 2 B106,B90
Chr8:57067467 C T EMS_canonical_SNV CDS_variant 5 A5,B137,B18,B2,B67
Chr8:57067546 GT G 1bp_deletion frameshift_variant 4 B36,B55,B81,D1
Chr8:57067546 GT G 1bp_deletion CDS_variant 4 B36,B55,B81,D1
Chr8:57067552 G GC 1bp_insertion frameshift_variant 4 B36,B55,B81,D1
Chr8:57067552 G GC 1bp_insertion CDS_variant 4 B36,B55,B81,D1
Chr8:57067557 CAG C 2bp_deletion frameshift_variant 4 B36,B55,B81,D1
Chr8:57067557 CAG C 2bp_deletion CDS_variant 4 B36,B55,B81,D1
Chr8:57067560 T TCG 2bp_insertion frameshift_variant 4 B36,B55,B81,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780952.1
612 aa
N
1
306
612
PPR_2
PPR_2
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 85-132 aa PF13041 PPR_2 153-203 aa PF12854 PPR_1 187-214 aa PF13041 PPR_2 189-240 aa PF01535 PPR 192-218 aa PF17177 PPR_long 197-340 aa PF12854 PPR_1 224-252 aa PF13812 PPR_3 225-271 aa PF13041 PPR_2 226-275 aa PF23276 TPR_24 229-318 aa PF01535 PPR 230-259 aa PF13812 PPR_3 251-305 aa PF12854 PPR_1 257-290 aa PF13041 PPR_2 261-310 aa PF01535 PPR 264-291 aa PF13812 PPR_3 285-342 aa PF12854 PPR_1 294-325 aa PF13041 PPR_2 296-343 aa PF01535 PPR 300-327 aa PF13812 PPR_3 323-379 aa PF12854 PPR_1 329-356 aa PF13041 PPR_2 331-371 aa PF01535 PPR 334-364 aa PF12854 PPR_1 363-391 aa PF13041 PPR_2 366-413 aa PF01535 PPR 369-392 aa PF23276 TPR_24 393-497 aa PF13812 PPR_3 396-446 aa PF12854 PPR_1 397-430 aa PF13041 PPR_2 401-449 aa PF01535 PPR 404-431 aa PF12854 PPR_1 434-465 aa PF01535 PPR 440-469 aa PF13041 PPR_2 440-485 aa PF13812 PPR_3 459-482 aa PF12854 PPR_1 467-498 aa PF13041 PPR_2 471-519 aa PF01535 PPR 474-503 aa PF23276 TPR_24 492-588 aa PF13812 PPR_3 495-549 aa PF12854 PPR_1 502-535 aa PF13041 PPR_2 507-555 aa PF01535 PPR 509-539 aa PF12854 PPR_1 537-570 aa PF13041 PPR_2 541-586 aa PF01535 PPR 544-574 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 85 132 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 153 203 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 187 214 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 189 240 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 192 218 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF17177 PPR_long Repeat 197 340 1.1e-23 84.5 Pentacotripeptide-repeat region of PRORP
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 224 252 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 225 271 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 226 275 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF23276 TPR_24 Repeat 229 318 9.3e-34 116.9 Pentatricopeptide repeat-containing protein
XP_057780952.1 Pfam PF01535 PPR Repeat 230 259 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 251 305 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 257 290 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 261 310 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 264 291 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 285 342 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 294 325 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 296 343 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 300 327 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 323 379 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 329 356 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 331 371 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 334 364 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 363 391 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 366 413 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 369 392 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF23276 TPR_24 Repeat 393 497 9.3e-34 116.9 Pentatricopeptide repeat-containing protein
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 396 446 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 397 430 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 401 449 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 404 431 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 434 465 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF01535 PPR Repeat 440 469 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 440 485 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 459 482 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 467 498 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 471 519 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 474 503 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF23276 TPR_24 Repeat 492 588 9.3e-34 116.9 Pentatricopeptide repeat-containing protein
XP_057780952.1 Pfam PF13812 PPR_3 Repeat 495 549 7.9e-63 209.2 Pentatricopeptide repeat domain
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 502 535 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 507 555 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 509 539 3.9e-92 297.0 PPR repeat
XP_057780952.1 Pfam PF12854 PPR_1 Repeat 537 570 6.6e-128 416.8 PPR repeat
XP_057780952.1 Pfam PF13041 PPR_2 Repeat 541 586 1.1e-173 564.1 PPR repeat family
XP_057780952.1 Pfam PF01535 PPR Repeat 544 574 3.9e-92 297.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924969.1
TTTCTTCTCACAAAACCCTATCTTTCCTTCTTCAACAGCGAGCTTCCCCAATTCTTCTGCTTTCACATCTCAAATCATACAATACTATCCCAAGAATGAGGTCGAACCACGCCGCCATGTTTCTGCCTAGAATTTTGTCAAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCTTCTTCACATTGTCAATCATTTCTTGTAAAACCCAGATTCAATTTTGATAATGTCAGCTGCCAAATGAGACACTTCTCCGCCTAT...

CDS

1 records

下载 CDS FASTA
LOC130999442
ATGAGGTCGAACCACGCCGCCATGTTTCTGCCTAGAATTTTGTCAAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCTTCTTCACATTGTCAATCATTTCTTGTAAAACCCAGATTCAATTTTGATAATGTCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTAAGCCTGATGATGCCGTCGCTCTATTTCGGGAAATGGTGAGGACGCAGCCGCTCCCTTATGTTTCTGT...

Protein

1 records

下载 Protein FASTA
XP_057780952.1
MRSNHAAMFLPRILSNSSSKFSTFSIASSHCQSFLVKPRFNFDNVSCQMRHFSAYPRFDFGSIRKPDDAVALFREMVRTQPLPYVSVFSKLLSTVVKMKQYSLALHLFDEMLQRNAPVNHYTLSIGIDCYCRLKRPDFGFAILGIFFKRGYEPTVVTFNILVKGLLFVERIPEAAKLLGKLSAYQLCEPDDYTYNTIINGLCKAGDILQAIDLLCSLEKGKGSCKPDVYAYNIVIDGLCKEGKVDEALQLFSTLGDKGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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