Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004776`

染色体: Chr08 坐标: 57103724-57105775 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004776`
名称	SmilChr08G004776
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57103724 - 57105775 / `+`

ID 对照

NCBI Gene ID	`LOC130999446`
GeneID	`130999446`
locus_tag	`-`
NCBI Name	`LOC130999446`
原始查询	`SmilChr08G004776`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=33.4; qcov=1.02; evalue=8.66e-109; confidence=low
Rice	`Os10g0495200` (Rf4) - identity=31.1; qcov=0.856; evalue=2.8e-74; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999446

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780956.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780956.1`
3	Nucleus	细胞核	0.00000	`XP_057780956.1`
4	Chromosome	染色体	0.00000	`XP_057780956.1`
5	Centromere	着丝粒	0.00000	`XP_057780956.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57103885`	`T`	`TG`	1bp_insertion	frameshift_variant	182	A1,A10,A13,A14,A15,A18,A19,A2,A20,A21,A22,A24,A25,A6,B1,B101,B102,B103,B105,B106,B107,B108,B11,B110,B111,B113,B114,B117,B118,B119,B12,B122,B123,B124,B125,B126,B127,B128,B130,B131,B132,B134,B136,B138,B139,B14,B140,B17,B18,B19,B2,B20,B21,B23,B24,B25,B26,B28,B29,B3,B30,B31,B33,B35,B36,B38,B39,B40,B41,B42,B43,B44,B45,B48,B49,B5,B50,B51,B52,B56,B58,B59,B6,B60,B64,B66,B67,B68,B69,B7,B71,B73,B74,B78,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B92,B93,B95,B96,B97,C1,C10,C12,C13,C14,C15,C16,C19,C2,C20,C21,C22,C27,C29,C3,C30,C31,C32,C34,C35,C36,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C70,C71,C73,C74,C75,C76,C79,C8,C80,C81,C83,C84,C86,C9,D10,D3,D4,D5,D6,D7,D9
`Chr8:57103891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B54,C15,C57,C77
`Chr8:57103939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,A9,B107,B29,B6
`Chr8:57103972`	`GAT`	`G`	2bp_deletion	frameshift_variant	4	A11,B107,C19,C46
`Chr8:57103972`	`GAT`	`G`	2bp_deletion	CDS_variant	4	A11,B107,C19,C46
`Chr8:57103976`	`C`	`CTT`	2bp_insertion	frameshift_variant	4	A11,B107,C19,C46
`Chr8:57103976`	`C`	`CTT`	2bp_insertion	CDS_variant	4	A11,B107,C19,C46
`Chr8:57103991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:57103994`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	B133
`Chr8:57103994`	`CTG`	`C`	2bp_deletion	CDS_variant	1	B133
`Chr8:57103997`	`C`	`CAT`	2bp_insertion	frameshift_variant	1	B133
`Chr8:57103997`	`C`	`CAT`	2bp_insertion	CDS_variant	1	B133

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780956.1

563 aa

282

563

PPR_2

PPR_1

PPR_3

PPR_2

PPR

PPR_1

PPR

PPR_1

PPR_3

PPR_2

PPR

TPR_24

PPR_long

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PF13041 PPR_2 85-132 aa PF12854 PPR_1 149-180 aa PF13812 PPR_3 149-199 aa PF13041 PPR_2 153-203 aa PF01535 PPR 156-182 aa PF12854 PPR_1 187-204 aa PF01535 PPR 193-218 aa PF12854 PPR_1 224-252 aa PF13812 PPR_3 225-271 aa PF13041 PPR_2 226-266 aa PF01535 PPR 229-259 aa PF23276 TPR_24 229-319 aa PF17177 PPR_long 235-389 aa PF12854 PPR_1 257-289 aa PF13041 PPR_2 261-304 aa PF01535 PPR 264-292 aa PF13812 PPR_3 285-333 aa PF12854 PPR_1 294-325 aa PF13041 PPR_2 296-334 aa PF01535 PPR 299-327 aa PF13812 PPR_3 323-379 aa PF12854 PPR_1 329-357 aa PF13041 PPR_2 331-380 aa PF01535 PPR 335-364 aa PF12854 PPR_1 363-391 aa PF13041 PPR_2 366-392 aa PF01535 PPR 369-391 aa PF13812 PPR_3 397-446 aa PF12854 PPR_1 398-430 aa PF13041 PPR_2 401-450 aa PF01535 PPR 404-433 aa PF12854 PPR_1 433-465 aa PF13041 PPR_2 436-484 aa PF01535 PPR 440-469 aa PF13812 PPR_3 460-502 aa PF12854 PPR_1 467-498 aa PF13041 PPR_2 471-504 aa PF01535 PPR 474-504 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	85	132	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	149	180	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13812`	PPR_3	Repeat	149	199	8.9e-49	164.2	Pentatricopeptide repeat domain
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	153	203	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	156	182	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	187	204	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	193	218	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	224	252	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13812`	PPR_3	Repeat	225	271	8.9e-49	164.2	Pentatricopeptide repeat domain
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	226	266	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	229	259	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF23276`	TPR_24	Repeat	229	319	3e-26	92.6	Pentatricopeptide repeat-containing protein
`XP_057780956.1`	Pfam	`PF17177`	PPR_long	Repeat	235	389	2e-18	67.3	Pentacotripeptide-repeat region of PRORP
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	257	289	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	261	304	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	264	292	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF13812`	PPR_3	Repeat	285	333	8.9e-49	164.2	Pentatricopeptide repeat domain
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	294	325	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	296	334	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	299	327	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF13812`	PPR_3	Repeat	323	379	8.9e-49	164.2	Pentatricopeptide repeat domain
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	329	357	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	331	380	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	335	364	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	363	391	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	366	392	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	369	391	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF13812`	PPR_3	Repeat	397	446	8.9e-49	164.2	Pentatricopeptide repeat domain
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	398	430	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	401	450	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	404	433	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	433	465	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	436	484	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	440	469	1.8e-77	251.1	PPR repeat
`XP_057780956.1`	Pfam	`PF13812`	PPR_3	Repeat	460	502	8.9e-49	164.2	Pentatricopeptide repeat domain
`XP_057780956.1`	Pfam	`PF12854`	PPR_1	Repeat	467	498	3.2e-107	350.6	PPR repeat
`XP_057780956.1`	Pfam	`PF13041`	PPR_2	Repeat	471	504	6.9e-115	375.8	PPR repeat family
`XP_057780956.1`	Pfam	`PF01535`	PPR	Repeat	474	504	1.8e-77	251.1	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924973.1
AACAACATCCAACGGCTTATAACCTGATTTACTTTACCTTTCTTCTCACAAAACCCTATCTTTCCTTCTTCAACAGCGAGCTTCCCCAATTCTTCAGCTTTCACATCTCAAATCCTACAAAACTATCCCAAGAATGAGCTCGAACCGCGCCGCCATGTTTCTGGCTAGAATTTTGTCAAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATCATCAATCATTTCTTGTAAAACCCAGATTCAATTTTG...

CDS

1 records

下载 CDS FASTA

LOC130999446
ATGAGCTCGAACCGCGCCGCCATGTTTCTGGCTAGAATTTTGTCAAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATCATCAATCATTTCTTGTAAAACCCAGATTCAATTTTGATAATGTCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGAAGATGATGAGAACGGAGCCGCTTCCTTATGTTACTGT...

Protein

1 records

下载 Protein FASTA

XP_057780956.1
MSSNRAAMFLARILSNSSSKFSTFAIASPHHQSFLVKPRFNFDNVSCQMRHFSAYPRFDFGSIREPNDAVALFRKMMRTEPLPYVTVFNKLLSVVVKMQQNTLALHLFDEMLQRDVPINHYTLNIAIDCYCRQKRPDFGFAILGIFFKRGYDPTVVTFTTLIKGLLLVGRVPEAAKVLKKLLVFRLCEPNERTYNTMINGVCKAVGSLHALELLCLLEKEMGICKPDVYSYTAVIDRLCKEGKVNDALQLFSSLGDKGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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