当前解析结果
SmilChr08G004783| 统一新 Gene ID | SmilChr08G004783 |
|---|---|
| 名称 | SmilChr08G004783 |
| 描述 | fimbrin-2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57149209 - 57153474 / - |
| NCBI Gene ID | LOC130999444 |
|---|---|
| GeneID | 130999444 |
| locus_tag | - |
| NCBI Name | LOC130999444 |
| 原始查询 | SmilChr08G004783 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fimbrin-2 |
| 产物 | fimbrin-2 |
| Arabidopsis | AT5G48460 (AT5G48460)Actin binding Calponin homology (CH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:834901] identity=73.6; qcov=0.994; evalue=0; confidence=high |
| Rice | Os02g0719100- identity=64.9; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005884 (actin filament); GO:0032432 (actin filament bundle); GO:0051015 (actin filament binding); GO:0051017 (actin filament bundle assembly); GO:0051639 (actin filament network formation) |
| KEGG | - |
| Pfam | PF00307 (CH) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999444 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057780953.1 |
| 2 | Cell projection | 细胞突起 | 0.80000 | XP_057780953.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057780953.1 |
| 4 | Ruffle | Ruffle | 0.40000 | XP_057780953.1 |
| 5 | Cell membrane | 细胞膜 | 0.20000 | XP_057780953.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57149437 |
T |
TGA |
2bp_insertion | frameshift_variant | 3 | B110,B40,B5 |
Chr8:57149437 |
T |
TGA |
2bp_insertion | CDS_variant | 3 | B110,B40,B5 |
Chr8:57149439 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B110,B40,B5 |
Chr8:57149439 |
T |
TC |
1bp_insertion | CDS_variant | 3 | B110,B40,B5 |
Chr8:57149495 |
TC |
T |
1bp_deletion | frameshift_variant | 30 | A1,A4,A5,A7,B11,B111,B114,B115,B14,B140,B20,B33,B34,B37,B45,B55,B57,B63,B71,B81,B89,C2,C27,C33,C46,C51,C6,C62,C9,D1 |
Chr8:57149497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B79,B95,C61 |
Chr8:57149539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B112,B119,B32,B35 |
Chr8:57149642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B25,B75,B99,C17 |
Chr8:57149658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr8:57149688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C28,C70,C78 |
Chr8:57149910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr8:57150236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780953.1PF00307
CH 152-238 aa
PF00307
CH 270-371 aa
PF00307
CH 396-498 aa
PF00307
CH 523-624 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780953.1 |
Pfam | PF00307 |
CH | Domain | 152 | 238 | 1.7e-82 | 273.5 | Calponin homology (CH) domain |
XP_057780953.1 |
Pfam | PF00307 |
CH | Domain | 270 | 371 | 1.7e-82 | 273.5 | Calponin homology (CH) domain |
XP_057780953.1 |
Pfam | PF00307 |
CH | Domain | 396 | 498 | 1.7e-82 | 273.5 | Calponin homology (CH) domain |
XP_057780953.1 |
Pfam | PF00307 |
CH | Domain | 523 | 624 | 1.7e-82 | 273.5 | Calponin homology (CH) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。