当前解析结果
SmilChr08G004786| 统一新 Gene ID | SmilChr08G004786 |
|---|---|
| 名称 | SmilChr08G004786 |
| 描述 | uncharacterized protein At5g48480 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57175126 - 57176578 / + |
| NCBI Gene ID | LOC130999457 |
|---|---|
| GeneID | 130999457 |
| locus_tag | - |
| NCBI Name | LOC130999457 |
| 原始查询 | SmilChr08G004786 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834903]; symbol=AT5G48480; hit=AT5G48480; species=arabidopsis; confidence=medium |
| 产物 | Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834903]; symbol=AT5G48480; hit=AT5G48480; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G48480 (AT5G48480)Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834903] identity=48.4; qcov=0.952; evalue=6.38e-30; confidence=medium |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF00903 (Glyoxalase); PF18029 (Glyoxalase_6); PF22650 (At5g48480-like_C); PF22656 (At5g48480-like_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999457 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057780967.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057780967.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780967.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780967.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780967.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57175347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr8:57175413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B33 |
Chr8:57175515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,B119 |
Chr8:57175542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C38 |
Chr8:57176211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr8:57176214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B97,C26 |
Chr8:57176235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780967.1PF22656
At5g48480-like_N 28-86 aa
PF18029
Glyoxalase_6 28-153 aa
PF00903
Glyoxalase 35-151 aa
PF22650
At5g48480-like_C 104-152 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780967.1 |
Pfam | PF22656 |
At5g48480-like_N | Domain | 28 | 86 | 4e-32 | 110.5 | Glyoxalase At5g48480-like, N-terminal domain |
XP_057780967.1 |
Pfam | PF18029 |
Glyoxalase_6 | Domain | 28 | 153 | 1.2e-05 | 26.7 | Glyoxalase-like domain |
XP_057780967.1 |
Pfam | PF00903 |
Glyoxalase | Domain | 35 | 151 | 5.7e-06 | 27.4 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057780967.1 |
Pfam | PF22650 |
At5g48480-like_C | Domain | 104 | 152 | 2.5e-12 | 47.7 | Glyoxalase At5g48480-like C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。