Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004788`

染色体: Chr08 坐标: 57189652-57192781 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004788`
名称	SmilChr08G004788
描述	uncharacterized SmilChr08G004788
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57189652 - 57192781 / `+`

ID 对照

NCBI Gene ID	`LOC130999452`
GeneID	`130999452`
locus_tag	`-`
NCBI Name	`LOC130999452`
原始查询	`SmilChr08G004788`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:817188]; symbol=AT2G26470; hit=AT2G26470; species=arabidopsis; confidence=high
产物	embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:817188]; symbol=AT2G26470; hit=AT2G26470; species=arabidopsis; confidence=high
Arabidopsis	`AT2G26470` (AT2G26470) embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:817188] identity=66.7; qcov=0.739; evalue=3.18e-126; confidence=high
Rice	`Os06g0470800` - identity=58.4; qcov=0.499; evalue=8.51e-62; confidence=medium
GO	GO:0003697 (single-stranded DNA binding); GO:0006974 (DNA damage response); GO:0018142 (GO:0018142)
KEGG	-
Pfam	PF02586 (SRAP)
InterPro	-
eggNOG	-
NR	GeneID:130999452

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780961.1`
2	Nucleoplasm	核质	1.00000	`XP_057780961.1`
3	Nuclear body	核内小体	0.40000	`XP_057780961.1`
4	Cytosol	细胞质基质	0.20000	`XP_057780961.1`
5	Chromosome	染色体	0.00000	`XP_057780961.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57189880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B112
`Chr8:57190026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B65,B74,C11,C69
`Chr8:57190044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr8:57190114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr8:57190571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:57191130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:57191136`	`TA`	`T`	1bp_deletion	frameshift_variant	5	B123,B14,B56,B72,B96
`Chr8:57191136`	`TA`	`T`	1bp_deletion	CDS_variant	5	B123,B14,B56,B72,B96
`Chr8:57191176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr8:57191216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:57191578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B55,C47,C86
`Chr8:57191683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B24,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780961.1

359 aa

180

359

SRAP

PF02586 SRAP 1-222 aa

XP_057780962.1

357 aa

178

357

SRAP

PF02586 SRAP 1-222 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780961.1`	Pfam	`PF02586`	SRAP	Family	1	222	6.8e-69	232.4	SOS response associated peptidase (SRAP)
`XP_057780962.1`	Pfam	`PF02586`	SRAP	Family	1	222	6.7e-69	232.4	SOS response associated peptidase (SRAP)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924979.1
TCCAAATGACGCGTTTTATCAGCACCTCGGATTAACGATAGATCCAACGGCCGATCTTCACTCTCAGCGTTACGAAAATTTCTACTTCATTTCTTCCCGCTTTGAATCGCGAAAAACCCTCGAAACCAAAGCCCGCGAAAGAGGGGAAAGAGCAATCGATGTGTGGAAGAGGAAGGTGTACTCTGCGGCCCGATGATTTTTCTCGGGCCTGCCATCTCAGCTCTCGGCCAGTCCGCCACATCGATATGGATCGGTATCGG...

XM_057924978.1
GCACCTCGGATTAACGATAGATCCAACGGCCGATCTTCACTCTCAGCGTTACGAAAATTTCTACTTCATTTCTTCCCGCTTTGAATCGCGAAAAACCCTCGAAACCAAAGCCCGCGAAAGAGGGGAAAGAGCAATCGATGTGTGGAAGAGGAAGGTGTACTCTGCGGCCCGATGATTTTTCTCGGGCCTGCCATCTCAGCTCTCGGCCAGTCCGCCACATCGATATGGATCGGTATCGGCCCTCGTACAACGTCGCGCCG...

CDS

2 records

下载 CDS FASTA

LOC130999452
ATGTGTGGAAGAGGAAGGTGTACTCTGCGGCCCGATGATTTTTCTCGGGCCTGCCATCTCAGCTCTCGGCCAGTCCGCCACATCGATATGGATCGGTATCGGCCCTCGTACAACGTCGCGCCGGGGTTCAACGTGCCGGTGGTTCGACGAGACGACGGAGGAGATGGCGGCGGCGACGGCGTCGTTTCGCACTGCATGAAATGGGGACTGGTTCCCAGCTTTACTAAGAAGACTGATAAAATCGACCACTTTAGGATGTT...

Protein

2 records

下载 Protein FASTA

XP_057780961.1
MCGRGRCTLRPDDFSRACHLSSRPVRHIDMDRYRPSYNVAPGFNVPVVRRDDGGDGGGDGVVSHCMKWGLVPSFTKKTDKIDHFRMFNARCESIREKASFRRLLPKNRCLVSFEGFYEWKKDGSKKQPYYIHFKDGRPLVFAALFDSWKNAEGETLYTFTIITTSSSSSLAWLHDRMPVILGSKESTDWWLSDSSLSNLDNILKPYEETDLAWYTVTPAIGKISFDGPECVKEIQVKMEETKTISQFFSKKQACKSEEQK...

XP_057780962.1
MCGRGRCTLRPDDFSRACHLSSRPVRHIDMDRYRPSYNVAPGFNVPVVRRDDGGDGGGDGVVSHCMKWGLVPSFTKKTDKIDHFRMFNARCESIREKASFRRLLPKNRCLVSFEGFYEWKKDGSKKQPYYIHFKDGRPLVFAALFDSWKNAEGETLYTFTIITTSSSSSLAWLHDRMPVILGSKESTDWWLSDSSLSNLDNILKPYEETDLAWYTVTPAIGKISFDGPECVKEVKMEETKTISQFFSKKQACKSEEQKLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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