Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004794`

染色体: Chr08 坐标: 57248296-57250270 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004794`
名称	SmilChr08G004794
描述	pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57248296 - 57250270 / `+`

ID 对照

NCBI Gene ID	`LOC130999460`
GeneID	`130999460`
locus_tag	`-`
NCBI Name	`LOC130999460`
原始查询	`SmilChr08G004794`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At5g41170%2C mitochondrial-like
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=33.7; qcov=0.952; evalue=7.36e-125; confidence=low
Rice	`Os08g0110200` (Rf6) - identity=32.2; qcov=0.85; evalue=2.27e-86; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999460

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780970.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780970.1`
3	Nucleus	细胞核	0.00000	`XP_057780970.1`
4	Chromosome	染色体	0.00000	`XP_057780970.1`
5	Centromere	着丝粒	0.00000	`XP_057780970.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57248432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr8:57248453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B35,C18,C83
`Chr8:57248501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,C18,C83
`Chr8:57248507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,B37,C3,C33
`Chr8:57248539`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,D9
`Chr8:57248544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B110,B138,B70,C73
`Chr8:57248569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,C72
`Chr8:57248723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,B77,C23
`Chr8:57248766`	`A`	`AT`	1bp_insertion	frameshift_variant	18	A13,A14,A25,A8,B101,B104,B119,B122,B123,B137,B140,B18,B2,B30,B67,B7,C41,C54
`Chr8:57248787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B16,C28,C70
`Chr8:57248830`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B26
`Chr8:57248830`	`TG`	`T`	1bp_deletion	CDS_variant	1	B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780970.1

599 aa

300

599

PPR

PPR_3

PPR_1

PPR_2

TPR_24

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR_long

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_long

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF01535 PPR 154-178 aa PF13812 PPR_3 208-258 aa PF12854 PPR_1 211-239 aa PF13041 PPR_2 213-262 aa PF23276 TPR_24 215-306 aa PF01535 PPR 216-246 aa PF12854 PPR_1 244-276 aa PF13041 PPR_2 248-296 aa PF01535 PPR 251-279 aa PF13812 PPR_3 272-330 aa PF12854 PPR_1 281-312 aa PF13041 PPR_2 283-321 aa PF01535 PPR 286-314 aa PF12854 PPR_1 316-344 aa PF13041 PPR_2 318-367 aa PF01535 PPR 322-351 aa PF13812 PPR_3 341-399 aa PF12854 PPR_1 350-373 aa PF13041 PPR_2 353-401 aa PF17177 PPR_long 356-476 aa PF01535 PPR 357-378 aa PF13041 PPR_2 389-436 aa PF01535 PPR 392-418 aa PF13812 PPR_3 411-470 aa PF12854 PPR_1 421-450 aa PF13041 PPR_2 424-472 aa PF01535 PPR 427-455 aa PF12854 PPR_1 454-485 aa PF13041 PPR_2 458-506 aa PF01535 PPR 461-490 aa PF17177 PPR_long 478-591 aa PF23276 TPR_24 481-578 aa PF13812 PPR_3 482-536 aa PF12854 PPR_1 489-522 aa PF13041 PPR_2 493-542 aa PF01535 PPR 496-526 aa PF12854 PPR_1 524-556 aa PF13041 PPR_2 528-573 aa PF01535 PPR 531-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	154	178	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF13812`	PPR_3	Repeat	208	258	1.4e-57	192.3	Pentatricopeptide repeat domain
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	211	239	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	213	262	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF23276`	TPR_24	Repeat	215	306	1.1e-35	123.2	Pentatricopeptide repeat-containing protein
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	216	246	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	244	276	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	248	296	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	251	279	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF13812`	PPR_3	Repeat	272	330	1.4e-57	192.3	Pentatricopeptide repeat domain
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	281	312	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	283	321	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	286	314	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	316	344	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	318	367	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	322	351	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF13812`	PPR_3	Repeat	341	399	1.4e-57	192.3	Pentatricopeptide repeat domain
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	350	373	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	353	401	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF17177`	PPR_long	Repeat	356	476	5.7e-27	95.2	Pentacotripeptide-repeat region of PRORP
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	357	378	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	389	436	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	392	418	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF13812`	PPR_3	Repeat	411	470	1.4e-57	192.3	Pentatricopeptide repeat domain
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	421	450	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	424	472	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	427	455	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	454	485	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	458	506	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	461	490	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF17177`	PPR_long	Repeat	478	591	5.7e-27	95.2	Pentacotripeptide-repeat region of PRORP
`XP_057780970.1`	Pfam	`PF23276`	TPR_24	Repeat	481	578	1.1e-35	123.2	Pentatricopeptide repeat-containing protein
`XP_057780970.1`	Pfam	`PF13812`	PPR_3	Repeat	482	536	1.4e-57	192.3	Pentatricopeptide repeat domain
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	489	522	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	493	542	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	496	526	3.2e-85	275.3	PPR repeat
`XP_057780970.1`	Pfam	`PF12854`	PPR_1	Repeat	524	556	1e-119	390.6	PPR repeat
`XP_057780970.1`	Pfam	`PF13041`	PPR_2	Repeat	528	573	2.7e-147	479.5	PPR repeat family
`XP_057780970.1`	Pfam	`PF01535`	PPR	Repeat	531	561	3.2e-85	275.3	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924987.1
CTCTAATTTTGTTTTCTGCAAAACCCTAGAAAGAAAGAGTGAGAATGAGTCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCTTTCAATTCATCCACTCTCCCCTTTGCTTCTCTACACTCGTTTCTTGTCAAACCCAGATTCAATTTTGATAATCTCACCCACCAAATTAGATACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGG...

CDS

1 records

下载 CDS FASTA

LOC130999460
ATGAGTCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCTTTCAATTCATCCACTCTCCCCTTTGCTTCTCTACACTCGTTTCTTGTCAAACCCAGATTCAATTTTGATAATCTCACCCACCAAATTAGATACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGGAGATGGTGAGGACGCAGCCGCGCCCTTATGCTTCTGTTTTCAG...

Protein

1 records

下载 Protein FASTA

XP_057780970.1
MSRNHAAMILGRIISNSSFNSSTLPFASLHSFLVKPRFNFDNLTHQIRYFSAYPRFDFGSIREPNDAVALFREMVRTQPRPYASVFSKLLTTVVKMKQYSLALHLIDEMLQRDVPVNHYILSIAIDCYCRQKRPDFGFAILGIFFKRGYEPTVVTFTTLIKGLLLVGRIPEATKVLWKLLVYRLCEPNEQTYVLSMRWNCSAYWKKKREXCKPDVYSYTAVIDRLCKEGKVNDALQLFSSLGDKGISPDVVTYNSIIEGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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