当前解析结果
SmilChr08G004796| 统一新 Gene ID | SmilChr08G004796 |
|---|---|
| 名称 | SmilChr08G004796 |
| 描述 | receptor like protein 22-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57263438 - 57277050 / - |
| NCBI Gene ID | LOC130999463 |
|---|---|
| GeneID | 130999463 |
| locus_tag | - |
| NCBI Name | LOC130999463 |
| 原始查询 | SmilChr08G004796 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor like protein 22-like |
| 产物 | receptor like protein 22-like |
| Arabidopsis | AT5G25910 (RLP52)receptor like protein 52 [Source:NCBI gene (formerly Entrezgene);Acc:832660] identity=37.4; qcov=0.912; evalue=4.44e-109; confidence=medium |
| Rice | Os12g0222800- identity=36.6; qcov=0.959; evalue=4.35e-97; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999463 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780973.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780973.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780973.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780973.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780973.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57263625 |
TG |
T |
1bp_deletion | frameshift_variant | 41 | A24,A6,A7,B100,B104,B120,B124,B125,B133,B136,B19,B26,B38,B39,B43,B44,B46,B49,B58,B6,B60,B64,B85,B94,C10,C13,C20,C32,C43,C55,C61,C68,C7,C75,C79,C8,C81,C86,D11,D8,D9 |
Chr8:57263629 |
G |
GC |
1bp_insertion | frameshift_variant | 40 | A24,A7,B100,B104,B120,B124,B125,B133,B136,B19,B26,B30,B38,B39,B43,B44,B46,B49,B58,B6,B60,B64,B94,C10,C13,C20,C32,C43,C55,C61,C68,C7,C75,C79,C8,C81,C86,D11,D8,D9 |
Chr8:57263633 |
T |
TCA |
2bp_insertion | frameshift_variant | 25 | A1,A15,A7,B107,B11,B114,B12,B131,B16,B56,B61,B63,B88,B93,B96,C15,C23,C27,C28,C30,C35,C46,C48,C70,D6 |
Chr8:57263635 |
G |
GC |
1bp_insertion | frameshift_variant | 25 | A1,A15,A7,B107,B11,B114,B12,B131,B16,B56,B61,B63,B88,B93,B96,C15,C23,C27,C28,C30,C35,C46,C48,C70,D6 |
Chr8:57263636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:57263660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B135,B30,B47,B55,B9 |
Chr8:57263686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr8:57263713 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C17 |
Chr8:57263713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr8:57263773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B139,B67,B97 |
Chr8:57263784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B121,B83,B89 |
Chr8:57263821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780973.1PF08263
LRRNT_2 30-70 aa
PF00560
LRR_1 99-121 aa
PF00560
LRR_1 123-143 aa
PF00560
LRR_1 173-195 aa
PF00560
LRR_1 197-219 aa
PF13855
LRR_8 197-256 aa
PF23598
LRR_14 215-398 aa
PF13855
LRR_8 220-280 aa
PF00560
LRR_1 221-243 aa
PF00560
LRR_1 246-267 aa
PF00560
LRR_1 269-291 aa
PF13855
LRR_8 269-328 aa
PF00560
LRR_1 318-339 aa
PF00560
LRR_1 392-408 aa
PF00560
LRR_1 457-477 aa
PF13855
LRR_8 457-514 aa
PF00560
LRR_1 480-501 aa
PF00560
LRR_1 504-524 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780973.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 70 | 2.1e-10 | 41.4 | Leucine rich repeat N-terminal domain |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 99 | 121 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 123 | 143 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 173 | 195 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 197 | 219 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 197 | 256 | 3.7e-38 | 129.8 | Leucine rich repeat |
XP_057780973.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 215 | 398 | 2.9e-31 | 109.2 | Leucine-rich repeat region |
XP_057780973.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 220 | 280 | 3.7e-38 | 129.8 | Leucine rich repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 221 | 243 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 246 | 267 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 269 | 291 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 269 | 328 | 3.7e-38 | 129.8 | Leucine rich repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 318 | 339 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 392 | 408 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 457 | 477 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 457 | 514 | 3.7e-38 | 129.8 | Leucine rich repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 480 | 501 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
XP_057780973.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 504 | 524 | 2.9e-50 | 158.0 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。